Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01531 ATGGCTGAGGCTGTGGTTGAAGTTGTGCTTGAAAATTTGAGCTCACTTGTTCAAAAAGAGCTTGGCCTATTTCTGGGTTTTGATCAAGACCTGAAAAGGCTTTCCAGTACACTCACTGCAATCAAGGCTACCCTTGAAGATGCTGAGGAGAAACAATTCTCAAACAGAGCTATAAAGGATTGGCTTAATAAGCTAACTGATGCAGCTCACGTCTTGGATGACATCTTGGACGAGTGTGCCACTGAAGCACTGGAGTTGGAGTACAAAGGAAAAGGATTCATGTGTGGTCTATCAGACAAGGTACAAAGCTCTTGCTTATCCTTTTTTCATCCCAAACATGATGCTTTCCGTTATAAAATTGCTAAGAAAATGAAGAGTATAAGGGAGAGATTAGACGAAATTGCTGAAGAAAGGAGTAAGTTTCATTTGACTGAAATGGTTACTGAGAGAAGAACTGGAGTCATTGACTGGCGCCAAACCACCTCAATCATTACTCAACCTCAAGTCTATGGAAGAGATGAAGATAAGGATAAAATTATAGACTTTTTGGTTGGTGATGCTTCTGGCTTTGAGGATTTATCAGTCTACCCAATACTAGGTCTAGGTGGACTTGGAAAAACAACACTTGCCCAACTCATCTTCAATGATGAGAGGGTAGTCAACCACTTTGAACAAAGAATCTGGGTGTGTGTTTCAGAAGATTTTAGTTTGAAGAGAATGACAAAAGCCATCATAGAATCTGCATCCAGGCGTGCCTGTGCAGATTTGGATCTAGAGCCACTACAGAGAGAACTTTTGGATTTGCTTCAAAGAAAAAGATATTTGCTGGTTTTGGATGATGTGTGGGATGATGAACAAGAGAATTGGCAGAGGCTGAAATCTGTATTGGCTTCTGGAGGTAAGGGTGCTTCAATTTTGGTGACTACTCGTCTTCCAAAGGTTGCAGCAATCATGGGAACAGTTCCTCCCCATGAATTACCAATGTTATCTGACAATGATTGTTGGGAGTTGTTTAAGCAACGAGCCTTTGGACTAAATGAGGCAGAGCGGGCAGAGCTTGTGGTCATAGGGAAGGAGATAGTAAAGAAGTGTGGAGGTGTGCCTCTAGCAGCTAAAGCACTAGGAAGTCTTTTGCGCTTTAAAAGAGAGGAAAGAGAATGGATCTATGTGAAGGAAAGCAAGTTGTGGAGTTTACCACAAGATGAGAACTCCGTGATGTCTGCCTTGAGATTAAGTTACCTGAACTTGCCAGTAAAGTTGAGACAATGTTTTGCTTTCTGTGCATTATTTTATAAAGATCAAATAATAAGCAAGCAATTTCTAATTGAACTTTGGATAGCTAATGGATTCATTTCATCCAACAAATTGTTGGATGCAGAAAATATAGGTGATGAGGTATGGAATGAATTATACTGGAGATCATTTTTCCAAGATATTCAGACAGATGCTTATGGCAACATTGCATATTTCAAGATGCATGATCTCGTTCATGATCTTGCTCAATCTGTTACAGAAGAGGTCTGTTGCATTATTGATGGAAATGGTGTAACTAGTGTGAATGAAAGAATTCGCCATCTCTCAATTTACTGGAGGGATCCATATGAGGAAGTCGATTCAATCCAATTGTTGCGCCAAGTCAAATCTTTGAAGACCTATGACAGTATCCAACTTTCACCCAAGGCATTGAAATGTTATTCTTTGAGGGTGCTTGTGATCAATCATGGGCTAAACAATTTCTCTAATTCAAATATTGGTCATTTGAAATATCTGAGATACTTGAATGTTTCTCACAGTGACTTCAAAACTCTTCCCAAATCACTTTGTTGCCTGTGGAATTTGCAAAATTTGAAGTTAGAACACTGTCGTTATCTACAAAAGTTACCTAATGGTTTGATTCGCCTAAAAGCTCTACAACATCTATTTTTGAGGGGGTGCAACTCATTATCAAGCTTGCCCGCTCAGATAGGGAAATTGACTTCCCTAAGGACTTTAAGCATATATGTTGTTGGCAAGAAAAGAGGGTTCCTTTTGGCAGAATTGGGACAATTGAACCTTAAAGGAAAGCTTCACATCAAGCATTTGGAGAGAGTAAAAAGTGTAATGGATGTCAAAGAAGCCAATATGTCAAGTAAGCATGTGAACCGATTGCTGTTGTCATGGGGGAGAAATGAAGAGGCCCGGTTACAAGAAAATGTTGAGCAAATTCTTGAAGTGCTTCAACCTAATATCCAACAACTTCAAGCTTTGGGCATCAGAGGATATACAGGTGTCAGTTTCCCACAATGGATGTCTAGTCCTTTTCTCAAGCGCTTGGTCCTCGTGGATTGCAAAAGTTGTTTACACCTTCCACAATTGGGGAAACTGCCATTTCTAAAGGAAATAAGAATAATCAACATGAGTCAAGTAAAATATCTGTTTGAGGAGTTGTATGATGGTGGAGTTGCAGTAGGTTTCGTTGCTTTGGAACTTCTGGAGCTGTTGCGGCTACCAAACCTGACAAGGTTGTCATCAAGAGAGGGTGCAGAAAACATATTCCCACGCCTTTCCAAACTTCAAATTTACGAATGTCCTAATTTGTTGGGCTTGCCTTGCCTTCCATCTCTAAAAGATCTATGTATAAAAGGGGAATGCAACATGGATTTACCAAGTTCAATTCATAAGCTCGGTAGTCTCGAATCCTTACTTTTCTTGGATAATGAGGAGTTAACTTGCTTTCCAGATGGGATGCTAAGAAACCTTGCTTCTCTTAAGATATTGGAATTTCATGGGTGCTCCAAACTTGAGCAACTCTCTGCTGAAATCATTAACCTTCATGATCTCCAAGTACTATATATTAAAAGTTGCCAAAGCCTTGTGTCATTGACAGATGGTGGAGTACTTCAAGGGTTGCACTCTCTCAGGATATTAGAAATTGTGGATTGCCCTAAGTTCAAGGTGTCCCTGTCAGCATACATGACTTGTCTTGAGGAATTAGTGATTTGCAGGTGTTCAGAGGTGGAAGGTTTACATGAGGCTTTACAACATATGACTGCACTCCAATCCTTAACATTTGATGATCTTCCAAACATAGCTTCCCTGCTTGATTGTTTTGGAAACCTTACTGGTTTAAAAAATTTGAGCATTTTCAAATGCCCCGGTTGGCAAAGCGATAACTCGAAGGGGATGAAAATTGACATGTTGTCCAAGGCAATTGTGGACTTTGAGAATGAATCTGATGCTTCCTTCAAGCTAACTTAA 3237 0.3994 MAEAVVEVVLENLSSLVQKELGLFLGFDQDLKRLSSTLTAIKATLEDAEEKQFSNRAIKDWLNKLTDAAHVLDDILDECATEALELEYKGKGFMCGLSDKVQSSCLSFFHPKHDAFRYKIAKKMKSIRERLDEIAEERSKFHLTEMVTERRTGVIDWRQTTSIITQPQVYGRDEDKDKIIDFLVGDASGFEDLSVYPILGLGGLGKTTLAQLIFNDERVVNHFEQRIWVCVSEDFSLKRMTKAIIESASRRACADLDLEPLQRELLDLLQRKRYLLVLDDVWDDEQENWQRLKSVLASGGKGASILVTTRLPKVAAIMGTVPPHELPMLSDNDCWELFKQRAFGLNEAERAELVVIGKEIVKKCGGVPLAAKALGSLLRFKREEREWIYVKESKLWSLPQDENSVMSALRLSYLNLPVKLRQCFAFCALFYKDQIISKQFLIELWIANGFISSNKLLDAENIGDEVWNELYWRSFFQDIQTDAYGNIAYFKMHDLVHDLAQSVTEEVCCIIDGNGVTSVNERIRHLSIYWRDPYEEVDSIQLLRQVKSLKTYDSIQLSPKALKCYSLRVLVINHGLNNFSNSNIGHLKYLRYLNVSHSDFKTLPKSLCCLWNLQNLKLEHCRYLQKLPNGLIRLKALQHLFLRGCNSLSSLPAQIGKLTSLRTLSIYVVGKKRGFLLAELGQLNLKGKLHIKHLERVKSVMDVKEANMSSKHVNRLLLSWGRNEEARLQENVEQILEVLQPNIQQLQALGIRGYTGVSFPQWMSSPFLKRLVLVDCKSCLHLPQLGKLPFLKEIRIINMSQVKYLFEELYDGGVAVGFVALELLELLRLPNLTRLSSREGAENIFPRLSKLQIYECPNLLGLPCLPSLKDLCIKGECNMDLPSSIHKLGSLESLLFLDNEELTCFPDGMLRNLASLKILEFHGCSKLEQLSAEIINLHDLQVLYIKSCQSLVSLTDGGVLQGLHSLRILEIVDCPKFKVSLSAYMTCLEELVICRCSEVEGLHEALQHMTALQSLTFDDLPNIASLLDCFGNLTGLKNLSIFKCPGWQSDNSKGMKIDMLSKAIVDFENESDASFKLT. 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01531 1078 Gene3D - 5 135 - -
Seca10g01531 1078 PANTHER DISEASE RESISTANCE PROTEIN RP 34 856 IPR044974 GO:0006952
Seca10g01531 1078 FunFam Probable disease resistance protein At1g63360 413 502 - -
Seca10g01531 1078 CDD RX-CC_like 2 136 IPR038005 -
Seca10g01531 1078 Gene3D - 328 411 IPR042197 -
Seca10g01531 1078 Gene3D Ribonuclease Inhibitor 893 1075 IPR032675 -
Seca10g01531 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 427 IPR027417 -
Seca10g01531 1078 Gene3D - 155 321 IPR027417 -
Seca10g01531 1078 FunFam Probable disease resistance protein At1g61300 151 322 - -
Seca10g01531 1078 Coils Coil 31 51 - -
Seca10g01531 1078 SUPERFAMILY L domain-like 476 898 - -
Seca10g01531 1078 Pfam NB-ARC domain 173 413 IPR002182 GO:0043531
Seca10g01531 1078 SUPERFAMILY RNI-like 824 1045 - -
Seca10g01531 1078 Gene3D - 412 503 IPR036388 -
Seca10g01531 1078 Gene3D Ribonuclease Inhibitor 509 669 IPR032675 -
Seca10g01531 1078 Gene3D Ribonuclease Inhibitor 677 867 IPR032675 -
Seca10g01531 1078 PRINTS Disease resistance protein signature 364 378 - -
Seca10g01531 1078 PRINTS Disease resistance protein signature 911 927 - -
Seca10g01531 1078 PRINTS Disease resistance protein signature 195 210 - -
Seca10g01531 1078 PRINTS Disease resistance protein signature 268 282 - -
Seca10g01531 1078 Pfam Rx N-terminal domain 5 87 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01531 Seca-Chr10 16618756 16624075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01531 192 687 WRKY Transcription Factor Family AT5G45050 22.621 6.48e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01531 - - mtr:11425422 1343.18