Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01517 ATGTTTCATTTGTTAGAACCTAACATTTCAATCCTTAAACAGAGGGTGCTTAAGATAGAGAAAACAATCATGCCATTTGGTTTGGTCTCAGCCTGGAACAAACGCCGTAGAAGCAAGTCTCAAGAACAAACAGACCCCTGGATTTACAAACCTGCACAACTTTGGCAACTTGAAGATCAAACACCACGACCTACAAAAAGGCTGCATGGATCATCTGTTTTCACTCTTAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAAAATCTGCTTGGAAAAGGAGGATTTGGCAAAGTCTACCGGGGAACTTTGCGATCAGGAGAGGTAACTAATATAATATGTCTCCCTCTGAAGGTTGTAGCAATCAAGAAAATGGAGCTTCCAGCAATTAAAGAGGCAGAGGGGGAACGTGAGTTCCGAGTCGAAGTTGACATTTTGAGCAGACTCAACCATCCAAATCTTGTCTCTTTGATAGGCTATTGTGCTGATGGAAAGCATAGATTCCTAGTATATGAATATATGCATAATGGGAACCTGCAAGATCATTTGAATGGAATTGGGAAAAGAAACATGGATTGGCCTCTAAGACTACAAGTGGCACTGGGAGCTGCTAAAGGGCTTGCTTATCTCCATTCAAGTTCTGATGTTGGAATTCCTATAGTTCATAGAGATTTTAAATCGACCAATATTCTCTTAAATGCCAACTTTGAAGCAAAGATATCTGATTTTGGACTTGCCAAGTTAATGCCAGAAGGACAGGAGACACATGTAACTGCCAGAGTGCTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATTGACCGGGAAACTCACTCTACAGAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAGCTTTTGACCGGACGTCGTGCTGTAGATCTAAGCCAGGGTCCTAGTGATCAGAACCTTGTACTACAGGTGAGGCACATACTGAATGACCGCAAGAAGCTTCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTACACCATTCAATCTATAGTCACGTTTGCCAATCTTGCATCAAGATGTGTCCGAACTGAGAGTAATGAGAGACCTTCAATGGCAGATTGTGTAAAAGAACTGCTAATGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCATAGTTTGAGACTGATCTAG 1185 0.4135 MFHLLEPNISILKQRVLKIEKTIMPFGLVSAWNKRRRSKSQEQTDPWIYKPAQLWQLEDQTPRPTKRLHGSSVFTLKEMEEATCSFSDENLLGKGGFGKVYRGTLRSGEVTNIICLPLKVVAIKKMELPAIKEAEGEREFRVEVDILSRLNHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGIGKRNMDWPLRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLNANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTLTGKLTLQSDVYAFGVVLLELLTGRRAVDLSQGPSDQNLVLQVRHILNDRKKLRKVIDPEMARNSYTIQSIVTFANLASRCVRTESNERPSMADCVKELLMIIYTNSKGLGMVMHSLRLI. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01517 394 FunFam serine/threonine-protein kinase PBS1-like 54 174 - -
Seca10g01517 394 CDD STKc_IRAK 92 373 - -
Seca10g01517 394 FunFam receptor-like serine/threonine-protein kinase NCRK 175 385 - -
Seca10g01517 394 ProSiteProfiles Protein kinase domain profile. 86 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01517 394 Pfam Protein tyrosine and serine/threonine kinase 90 373 IPR001245 GO:0004672|GO:0006468
Seca10g01517 394 PANTHER OS01G0750732 PROTEIN 45 376 - -
Seca10g01517 394 SUPERFAMILY Protein kinase-like (PK-like) 72 380 IPR011009 -
Seca10g01517 394 ProSitePatterns Protein kinases ATP-binding region signature. 92 125 IPR017441 GO:0005524
Seca10g01517 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Seca10g01517 394 Gene3D Phosphorylase Kinase; domain 1 57 174 - -
Seca10g01517 394 Gene3D Transferase(Phosphotransferase) domain 1 175 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01517 Seca-Chr10 16429745 16433561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01517 69 377 Receptor kinase-like Gene Family AT3G58690 46.497 1.24e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Seca10g01517 PK_Tyr_Ser-Thr 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01517 - - aprc:113868910 687.567