Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01511 ATGGTAATTAGTGAAGGAATGAGTGTAACGGCAGCAATGGTTGGAGCTCAGTTGTTAGAAGTGGGATTGAACACTCTAATCAAGGCAGCCACCACCGATGGAATGAGTGATTTTGTTTTCATTGTCTACTCTAACCTTTTTGCTCTCTGCTTCTTCCTTCTACCATCCACACTCCTCTACCACAGGAACAAACCTCCTCCCCCAATCTCAACCTCAATTCTCTGCAGAATATTTCTTCTTTGCTGCCTCAGCACTGCAGTGCAGACGTTGATGTACACTGGAATTGGATATAGCTCTCCCACGCTCGCCTCAGCTATGTTGGACCTTCTCCCTGCTTTTACCTTCATACTTGCACTCATTTCCAGGATGGAAAAACTGAATCTGAATCTGCATAGCAGTCAAGCAAAGATTATTGGCACTGTGGTCTCCATTGCAGGGGCATTAATCGTGACTTTATATAAGGGGATGCCATTAACTAGTAGTTCCATGCTAAATATGGTATTGGGTGGAAATGGAAGTTACCTCTCAGTGCAATCAGAGTGGTTACTTGGTGGTTTTCTTCTTGCAACTGCTAGCTTTTGCCTTTCAGTTTTGTTCATTGTCCAGACTTGGGTTATCAGGGACTATCCTCAAGAGCTAGTGGTAACCACCATTTGTTGCAGCATGGTGGTAATCCTATCCGCCATAGTAGCTCTCATTGCTGAGGGAAATGCAGAAGCTTGGATACTCAAACCTGATAAGGAATTGGCAGCTGTGTGTTATTCAGCAATTTTTGTGGTATCAATGCGGAGTATTGTGACAGCATGGGCATGCCGTAAGAAGGGACCAGTTTTTGTAGCTATGTTCAACCCTTTAGGAATGGTAATTGCACTTGGCATGGGGGTAATATTTCTTGGAGACAGTCTTTATCTGGGAAGTATGATTGGAGCCGCTACAATAGCTATTGGATTTTATGCTGTGATGTGGGCACAGGCTCAACAGGAAAACACAGTGAATGAGAAGAATGATTTTGTCTCATCTTCGGCCCCTCTGTTGTCCAATAAAAGCATGGATGTGTAG 1059 0.4391 MVISEGMSVTAAMVGAQLLEVGLNTLIKAATTDGMSDFVFIVYSNLFALCFFLLPSTLLYHRNKPPPPISTSILCRIFLLCCLSTAVQTLMYTGIGYSSPTLASAMLDLLPAFTFILALISRMEKLNLNLHSSQAKIIGTVVSIAGALIVTLYKGMPLTSSSMLNMVLGGNGSYLSVQSEWLLGGFLLATASFCLSVLFIVQTWVIRDYPQELVVTTICCSMVVILSAIVALIAEGNAEAWILKPDKELAAVCYSAIFVVSMRSIVTAWACRKKGPVFVAMFNPLGMVIALGMGVIFLGDSLYLGSMIGAATIAIGFYAVMWAQAQQENTVNEKNDFVSSSAPLLSNKSMDV. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01511 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 154 - -
Seca10g01511 352 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020
Seca10g01511 352 Pfam EamA-like transporter family 22 151 IPR000620 GO:0016020
Seca10g01511 352 PANTHER WAT1-RELATED PROTEIN 10 333 IPR030184 GO:0016020|GO:0022857
Seca10g01511 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01511 Seca-Chr10 16382281 16394130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01511 11 345 Nodulin-like Gene Family AT5G40240 42.604 3.44e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01511 - - gmx:100793168 518.464