Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01506 ATGCATTGGCTTCACTCTCAAATCCGCCAGAGCAATGGTGCTATCACCAATCCCCCAATTGTTTCTCCATATTCTTCTTCCCCTTCAATTCCTTACAGTTCTAACTACCAGAAACAATCAGCACCACTCCCAGCTTCTTCATCTGGGAATAGAATAAGCCCTGCAATTCTTTTCATCATAATCATTTTAGCTGTTGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCCTCATCAATTTCCCAATCCAGTAGATACCCAGACATGTCTGAATCTGATGCTTACCAAAGACAGTTGCAGCAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTACCTGTTTTCTTTTACAAGGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAATTCTTGGAACAAGACAAGCTGAGATTGCTGCCTGTCTGTAATCATGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTTTATGCACCAGGCTTTGCCTTTGAAAACCCATTTTTTGAGTTTGAGGGTCCAAGGGAGGAAGATGGGGTTTCAGGCAGTGGTGGGGGCGGGGCTGCTTCTGTTAACAAACCTACAGAAAATCACATAATGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCTCAAATAATGGAGATGTGGTGGTTGAAGGAGGTGAAGGAGAGAGCAGTAATGGTAATTTGGAATTGGATGTAAGGAGATGCTATTCAATGGGGTCTTTCCAATATGTGGTTGCTGATTCAGATTTGAGAGTGGCTTTCTGCCCCAATAGAGGTGATAGCAGTATGAGACAACTGAAGGGAAGAGCAGCCCCAAATGGAAATTCTTTCATTGATGGGGATGTTGAAGGCAAAAATATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTAACAAGTTCATCAGATACCCATTTCCATAATTCTACTGCCACTGCAACTTTGCCATGGATGAATAAAGCCAGAGGTACATGA 1128 0.4202 MHWLHSQIRQSNGAITNPPIVSPYSSSPSIPYSSNYQKQSAPLPASSSGNRISPAILFIIIILAVVFFILGLLHLLVRFLIKHRSSSSISQSSRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPVCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFAFENPFFEFEGPREEDGVSGSGGGGAASVNKPTENHIMNGKRVFSVRLGKFRSSNNGDVVVEGGEGESSNGNLELDVRRCYSMGSFQYVVADSDLRVAFCPNRGDSSMRQLKGRAAPNGNSFIDGDVEGKNINIARKGESFSVSKIWQWSRKDKLTSSSDTHFHNSTATATLPWMNKARGT. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01506 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 191 IPR013083 -
Seca10g01506 375 FunFam RING-H2 finger protein ATL46 106 191 - -
Seca10g01506 375 Pfam Ring finger domain 143 186 IPR001841 -
Seca10g01506 375 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Seca10g01506 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 341 - -
Seca10g01506 375 SMART ring_2 144 185 IPR001841 -
Seca10g01506 375 SUPERFAMILY RING/U-box 123 192 - -
Seca10g01506 375 CDD RING-H2_EL5-like 143 186 - -
Seca10g01506 375 MobiDBLite consensus disorder prediction 207 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01506 Seca-Chr10 16299324 16300451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01506 71 353 C3H Transcription Factor Family AT2G18650 41.534 2.52e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01506 - - gmx:100805154 545.428