Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01503 ATGGCATCAAGATCATATGTTAATCTACTAGACTTAGCTGGAGGTTTTCTGGATATTCTTCACACCCCAAGAACTATTCCAAGGATTATGACTGTTCCTGGAGTTATTTCTGACCTGGATGGTTATGGTAGAGATGGGGATTCAGATGTTAGCTCTTCTGGTTATCGGGAGCGGAAAATCATTGTGGCGAACATGTTGCCATTGCATGCTAAAAGAGATATAGTAACTGCTAAATGGTGTTTCAGTTTGGATGAGGATTCAATTCTGTTACAATTAAAAGATGGTTTTTCTTCTGACACTGAGGTGATCTATGTGGGATCCCTCAAGGTTGAAATAGATGCCAGCGAGCAGGAAGAAGTTGCTCAGAAATTACTGGAGGACTTTAGTTGCATACCTACCTTTCTACCCCATGATCTCCAGAAAAAGTTTTATCTTGGTTTTTGTAAGCAGCAGCTTTGGCCTCTCTTTCATTACATGCTACCTATGTGTCCTGATCATGGTGACCGTTTTGACCGCTTGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCGGACAAGGTGATGGAAATAATCAATCCTGACGATGATTTTGTTTGGGTTCATGATTATCACTTGATGGTTTTGCCTACATTCTTGAGGAAGCGGTATAATCGAGTTAAACTTGGTTTCTTTCTTCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTTTGCCAGTAAGGGATGAAATTCTGAGGGGATTGTTAAATTCTGATTTAATTGGTTTTCATACATTTGATTATGCTCGCCACTTCCTCTCTTGCTGCAGTAGAATGCTTGGTCTGGACTATGAATCTAAGCGAGGACATATAGGACTTGATTACTTCGGTCGTACTATATTTATCAAAATTTTGCCTGTGGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCTCCATTCTACATCTGCTAAATTGAAAGAGATTCAGGAAGAGTTTAAGGATAGGAAGGTAATTCTTGGTGTTGATGACATGGATATTTTCAAGGGCATCAGTCTGAAGCTCCTAGCTGTTGAGCAGCTGCTGCTGCAGAATCCAGATTTGCAGGGCAAAGCTGTCCTAGTTCAGATTGTGAATCCTGCTAGGGGTTCAGGTAAGGATGTTCTGGAAGCAAAGAAGGAAACATATTTAATTGCCCAGAGGATTAATAATACTTATGGTTCAAACCAATATCGGCCAGTTATTCTCATTGACCGTCCTGTTCCTCGTTTTGAGAAGAGTGCATATTATGCTGCAGCAGAATGTTGCATTGTCAATGCTGTTAGGGATGGTATGAACTTAGTCCCATACAAATATATTGTCTGTAGACAAGGAACTGCACAGTTGGATAAAGCTTTGATTAGAAAAGGTGATACTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATCGGTTGTTCTCCTTCTCTAAGTGGAGCAATCAGGGTAAATCCCTGGGACATAGATGCTGTGGCTGATGCTCTTTATTCAGCCATTACTATGCATGATTCAGAAAAGCAATTGAGGCATGAGAAACACTATCGATATGTCAGTTCTCATGATGTGGCGTACTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACGAAAAGATGCTGGGGAATGGGTTTGGGTCTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGTTTTAGGAAATTGTCTGTTGACCATATTGTTTCGGCATACAAAAGAACCAGTAGAAGAGCCATATTTCTTGATTATGATGGTACTGTTGTACCGCAATCTTCTATAAATAAAACCCCCAGCCCCGAAGTCATCTCTGTGCTAAATGATCTGTGTAATGATAGTAAAAATACTGTGTTCATTGTGAGTGGTAGGGGAAGAGATTCTTTAAGTGACTGGTTTTCTTCATGCAAAATGATGGGACTTGCAGCTGAACATGGATACTTTTTAAGGTGGAGTAAAGATTCTGAATGGGAAACGAGTCACTTGTCTGCTGATCTTGAGTGGAAGAATATTGTTGAACCTGTCATGCAGCTGTATATGGAAGCAACTGATGGATCTAATATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGCTCTTGCCAAGCCAAAGAACTGTTGAATCACCTGGAAAGCGTGCTTGCTAATGAACCTACAGTTGTCAAGAGGGGCCAGCATATTGTTGAAGTCAAGCCACAGGGAATAAGCAAGGGCTTGGTAGCTGAAAAGATTCTTTCCACTATGGTTGATGGTGGTAATCCACCAGATTTTGTAATGTGCATTGGAGATGATATTTCTGATGAAGACATGTTTGAGAGCATATTAAGGACAGTTTCATGCCCATCATTGCCAGTAGCTCCAGAGATCTTTGCCTGCACTGTTGGTCAAAAACCTAGCAAGGCCAAGTATTATCTTCATGATCCTGCTGATGTCATGAAGTTGCTTCAAGCCCTTGGCACTTCATCTAATCCAAAGCCGAAGCATCTGGCTCAATTCCAAGTTTCTTTTGAGAGCACGGTTTGA 2580 0.4109 MASRSYVNLLDLAGGFLDILHTPRTIPRIMTVPGVISDLDGYGRDGDSDVSSSGYRERKIIVANMLPLHAKRDIVTAKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKVEIDASEQEEVAQKLLEDFSCIPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPMCPDHGDRFDRLLWQAYVSANKIFADKVMEIINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLHSTSAKLKEIQEEFKDRKVILGVDDMDIFKGISLKLLAVEQLLLQNPDLQGKAVLVQIVNPARGSGKDVLEAKKETYLIAQRINNTYGSNQYRPVILIDRPVPRFEKSAYYAAAECCIVNAVRDGMNLVPYKYIVCRQGTAQLDKALIRKGDTPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALYSAITMHDSEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSVDHIVSAYKRTSRRAIFLDYDGTVVPQSSINKTPSPEVISVLNDLCNDSKNTVFIVSGRGRDSLSDWFSSCKMMGLAAEHGYFLRWSKDSEWETSHLSADLEWKNIVEPVMQLYMEATDGSNIEIKESALVWHHQDADPDFGSCQAKELLNHLESVLANEPTVVKRGQHIVEVKPQGISKGLVAEKILSTMVDGGNPPDFVMCIGDDISDEDMFESILRTVSCPSLPVAPEIFACTVGQKPSKAKYYLHDPADVMKLLQALGTSSNPKPKHLAQFQVSFESTV. 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01503 859 Gene3D Glycogen Phosphorylase B; 311 527 - -
Seca10g01503 859 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 58 547 - -
Seca10g01503 859 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Seca10g01503 859 CDD HAD_TPP 591 832 - -
Seca10g01503 859 Gene3D - 719 850 IPR023214 -
Seca10g01503 859 Gene3D - 589 703 IPR023214 -
Seca10g01503 859 SUPERFAMILY HAD-like 590 838 IPR036412 -
Seca10g01503 859 CDD GT20_TPS 58 543 IPR001830 GO:0003824|GO:0005992
Seca10g01503 859 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 838 IPR001830 GO:0003824|GO:0005992
Seca10g01503 859 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 850 - -
Seca10g01503 859 Pfam Glycosyltransferase family 20 58 543 IPR001830 GO:0003824|GO:0005992
Seca10g01503 859 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Seca10g01503 859 FunFam Alpha,alpha-trehalose-phosphate synthase 312 527 - -
Seca10g01503 859 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 51 310 - -
Seca10g01503 859 NCBIfam HAD-IIB family hydrolase 591 792 IPR006379 -
Seca10g01503 859 NCBIfam trehalose-phosphatase 588 837 IPR003337 GO:0003824|GO:0005992
Seca10g01503 859 Gene3D Glycogen Phosphorylase B; 52 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01503 Seca-Chr10 16257452 16262258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01503 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.164 0.0 1343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01503 K16055 - gmx:100818536 1592.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01503 10 16257452 16262258 Seca10g01503 10 16257452 16262258 ECH
Seca10g01503 10 16257452 16262258 Seca12g03732 12 95786373 95792323 PCT