Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01496 ATGATCCAAAAAACAGACGGGTCGGATCGCCGGATTCTGACTTTCCCGGCGGTTCATCCCTGCGAGGACATTTCTCCTTCTACCCTTCTCTCTTCCCTCATAACCCTTTCTAACGCAATTTCCACTTTCCAATACAGATTCTTCCCCTGCAACAAGCGAAACGCGAGAAACGCCATTCGTTTGACCCGGCTTCTCCAACCTTTCCTGCATGAGATCCGAGACCATCATTCGGGTCTTCCTGACCCGGCGATGATCACCTTGTCGGAGCTCCATCTTACCTTCCAGAAGCTTCTTTTCTTGCTGGAAGACTCAGCTCGTGATGGTGCCCGGCTTCGGATGTTAATGGAGTCGGATCGGGTCGCAAACCAGTTTCGGGTCTTGTCCAGATCCATGGCCACGGCTCTGGATGTTTTCCCTTTCGGTTCTGTTTATGTCTCAGAGGAAGCTGCAGAGCAGGTTGTGCTGCTCATGAAGCAAGCAAGGGATGCTAGGTTTGAGGTTGAGCCTGATGATAAGCATGCTGTGATGGGTGTTATGTCGGTTTTGACCCAGTTTGAGAATCGGGTTGCTCCGAATGAGGGTGATCTGAAGCGGGTTCTTGATTATATTGGGGTTTTCGGGTGGAGTGAGTGTAATAAGGAGGTGAAGTTTTTAGATGCTGAAATTGGGTTTGAGTGCTTGAATGAGGAAAAGAGAAAGGTGGGTTATTTAAGCAGTTTGATGGGGTTCATGAGTTACTGTAGATGTGTAGTGATGGAAGTTGTAGATAGTGAAGTTTGTAATAAAAAATCTGATGCAGGCAGAGAAAGCGTGAATGAAAACGAGATGATTCTGAGTTGTGTTAACCCAGATGATTTTCGATGTCCAATCACTTTGGAGTTGATGAGTGATCCAGTGACAATAGAGACAGGTCATACTTATGATCGTTCCTCAATTCTCAAATGGTTCAGAAGTGGAAATGCAATATGTCCCAAAACAGGTAAAAGGCTTAGCAGCATTGAACTGGTACCCAATTTGATTCTCCGGAGGTTGATTCAGCAATATTGCATTGCCAATGGCATTCCTTTTGCTGATCTGGGTCGTAGGAATCGTGACATCACAAGGACTGTGCAGCCAGGAAGTGTGGCAGCAGAGGAAGCCATGAAAATGTTAGCTGGTTTTCTTTGCAAAAGGCTTGAGAATGGCACTGTGGAAGAGAAGAACCGAGCTGCGTTTGAAATGAGGCTTCTTTCTAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCAGTTCCTCTTTTGTTGAAGTTGCTGTCATCAAGAGACTCATCAGCACAAGAGAATGCAGTTGCAGCCCTTTTGAACCTCTCAAAATACCCCAAAAGTAGAGCTGAGATGGTTCAGAATTGGGGGTTAGAATTGATTGTTGGGGTCTTAAAGAAAGGGCTAAAGATTGAAGCTTGCCAGCATGCTGCTGCTGTGTTGTTTTACCTTGCTTCTAATGCTGAGTATGGGAAATTGATAGGGGAGGATCCAGATGCAATTCCATCATTGATCAGACTCATCAAAGATGGTTCTGATCGAAGCAAAAAGAATGGATTGGTTGCAATGTTTGGCCTCCTTAGGCACCCTGAAAATCATAGGAAGGTGCTTGCAGCTGGAGCAATTCCTTTGCTGGTTAACTTCTTAAAAGCATTTGTAAAAGAAGACCTTATCACAGACTCATTAGCAATTCTAGCAACTCTGGCTGAGAAAAGTGATGGAGCATTTGCAATCCTTCACTGTGGAGCTTTGCATTTAGCTATTGAAATATTGAATTCTTCCACTTCAAGGGTGGGAAAGGAGTACTGTGTGTCTCTATTGCTTTCTCTATCAACAAATGGAGGAGAAGATGTGGTTGCTCATTTAGTAAAGAGCCCTTCTCTTATGGGATCATTATATTCCCAACTCAGTGAAGGCACATCTCGAGCAAGCAAGAAGGCAAGTGCTCTCATCAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGCTTCAAGACTTCAGTTGTTCCACAAGAACAATTCATTCACGTATGGTAA 2070 0.4449 MIQKTDGSDRRILTFPAVHPCEDISPSTLLSSLITLSNAISTFQYRFFPCNKRNARNAIRLTRLLQPFLHEIRDHHSGLPDPAMITLSELHLTFQKLLFLLEDSARDGARLRMLMESDRVANQFRVLSRSMATALDVFPFGSVYVSEEAAEQVVLLMKQARDARFEVEPDDKHAVMGVMSVLTQFENRVAPNEGDLKRVLDYIGVFGWSECNKEVKFLDAEIGFECLNEEKRKVGYLSSLMGFMSYCRCVVMEVVDSEVCNKKSDAGRESVNENEMILSCVNPDDFRCPITLELMSDPVTIETGHTYDRSSILKWFRSGNAICPKTGKRLSSIELVPNLILRRLIQQYCIANGIPFADLGRRNRDITRTVQPGSVAAEEAMKMLAGFLCKRLENGTVEEKNRAAFEMRLLSKTSIFSRSCLVEAGSVPLLLKLLSSRDSSAQENAVAALLNLSKYPKSRAEMVQNWGLELIVGVLKKGLKIEACQHAAAVLFYLASNAEYGKLIGEDPDAIPSLIRLIKDGSDRSKKNGLVAMFGLLRHPENHRKVLAAGAIPLLVNFLKAFVKEDLITDSLAILATLAEKSDGAFAILHCGALHLAIEILNSSTSRVGKEYCVSLLLSLSTNGGEDVVAHLVKSPSLMGSLYSQLSEGTSRASKKASALIRVLHDFYERRSSGFKTSVVPQEQFIHVW. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01496 689 Gene3D - 365 672 IPR011989 -
Seca10g01496 689 SUPERFAMILY RING/U-box 282 356 - -
Seca10g01496 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Seca10g01496 689 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Seca10g01496 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 355 IPR013083 -
Seca10g01496 689 SUPERFAMILY ARM repeat 387 664 IPR016024 -
Seca10g01496 689 CDD RING-Ubox_PUB 283 335 IPR045210 -
Seca10g01496 689 SMART arm_5 581 622 IPR000225 GO:0005515
Seca10g01496 689 SMART arm_5 539 580 IPR000225 GO:0005515
Seca10g01496 689 SMART arm_5 413 454 IPR000225 GO:0005515
Seca10g01496 689 SMART arm_5 455 496 IPR000225 GO:0005515
Seca10g01496 689 Pfam U-box domain 283 351 IPR003613 GO:0004842|GO:0016567
Seca10g01496 689 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Seca10g01496 689 FunFam RING-type E3 ubiquitin transferase 362 675 - -
Seca10g01496 689 PANTHER U BOX DOMAIN-CONTAINING 53 664 - -
Seca10g01496 689 FunFam RING-type E3 ubiquitin transferase 282 354 - -
Seca10g01496 689 Pfam Armadillo/beta-catenin-like repeat 418 453 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01496 Seca-Chr10 16174661 16176730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01496 1 689 U-box Gene Family AT1G60190 46.000 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01496 - - gmx:100795816 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01496 10 16174661 16176730 Seca10g01496 10 16174661 16176730 ECH