Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01481 ATGGCTAATAAAACTAATGGAACCTCATCGATTGGGAACTCTTCTTCTTCTTCTTCTTTGTTCAATTCCTCTCTTTCGAAAGATTCAGACAAGCCTCCGGCTCTCTCGCCATTATCTTTGACCGACGATGACTCAGATTCTCCGGGAACTGCACCATCAAAGACTCCTCCACCGTCGTCGCAGTCTCCTCCATCACAGTCACCGCCATCTCAGCCTGTATCATCACCGCCATCGCCGTCAGAGGCTAATTCTCCACCACCTTCACCGCCTCCATCTTCGCCGCCGCCACAATCCTCACCACCACCTCCGCTACCGTCGCCTCCACCGCCGGATTCTTCACCGCCTCCATCAAGTCCACCGCCACCAAAAGCTTCATCTCCTCCCCCGACTCCATCAACGCCACCCCTGTCACCACCACCATCATCGCCACCACCAACACCACCATCACAATTGCCACCGTCACCACCACCTCCCAACGCTAACGATTCTCCCCCTCCATCACTATCACAACCTCATTCCCCTCCTCCTCCAGCTCTTCCAACTCCAACCCTACCTTCCCCTGCTTCCCACGTTCCTCCCACTCTTCCACCGCCGCCACCAACAACCGGTCCATTACCAAACCATCCTCCGCCGCAACAGTCACCACCTGTTCCCCCTGGCTCCCATACAAAACCAGGCACTTCCCCTTCTAAAAGCCACGCGCCATCCACGTCACCGCCCTCCGGTGATAACAATAACACAGGACAATACGTTGGTTTTGCACTTGCCGCGGTTTTCGTTCTTGCTTTTATCGCTGTGATTCTTTATATTATATTGAAGAGGAAGAACAAGCTAGGGAGTTTCTATAACGTGCAACCCACTAGGAAATCTCAAATGAAAGGAGATGTGCATTACTATGTAGAGGAGCCTGGTTTTGGGAATGGTCCACAAGATGGGTTTTATAGTTTTCAACCTCCACATGCAGGTGCCGTGGTGCAGCATTTGAGAACTCCTTCGGACCCAGCTCAGGCTCAGCAAATGAATACGGGTCAGATGGTTTTTAGCTATGACAAAGTTGCGGAAATTACGAATGGGTTTGCTAGTGAAAATGTTATTGGAGAAGGAGGGTTTGGGTGTGTTTACAAGGCTTCTATGCCTGATGGTAGAGTGGGAGCGGTTAAGCTTCTCAAGGCTGGTAGTGGACAGGGAGAAAGAGAGTTTAGGGCTGAGGTGGAGATTATTAGCCGTGTCCATCATCGACATTTGGTATCTTTGATTGGTTATTGCATATCTGAGCAGCAAAGAGTGCTTATCTATGAATATGTTCCTAATGGGAATCTCAATCAGCACTTGCATGGAAGTGGAAGGCTAGTTTTGGATTGGCCCAAGAGGGTGAAGATAGCAATTGGTGCTGCAAGGGGGCTGGCATATCTGCATGAAGGCTGCAACCCAAAGATTATTCATAGAGATATTAAGTCGGCAAATATACTTTTGGATGATGTTTATGAGGCACAGGTTGCAGACTTTGGACTTGCTAGACTAACCGATGATGCTAATACTCATGTATCAACTAGAGTGATGGGGACATTCGGGTACATGGCTCCAGAGTATGCAACGAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCATTTGGAGTTGTCCTCCTTGAGCTTATAACTGGAAGGAAACCTGTTGATCCAACGCAGCCTGTGGGAGATGAGAGCCTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGTCAGGTGACTTTGGTGAACTAGTAGACCCAAGGCTTGACCGGCAATATGTTGACAGTGAAATGTTCACAATGATTGAGGCAGCTGCAGCATGTGTTCGCCATTCTGCCCCAAAACGGCCTCGTATGGTTCAGGTGGCAAGAGCCTTAGACAGTGGAGATCAATTATACGATCTATCAAATGGGGTGAAATATGGTCAGAGCACAGTATATGATTCTGGCCAGTATAATGAAGACATTATGAGATTCAGAAGGATGATCAATGGAAGCTTTGATGATTCTGAATTTGATATGTACAGCACAGATTACACTTCAACAGAAGTATCTGCACCCAGACATACATGGAGGCCACCTAGTTCAGGTGGTGATTCGGAAATTAGAGCTTTCAACAGCCAAAGGGGCAGTTCTGATCACAGGCCTTGA 2169 0.4836 MANKTNGTSSIGNSSSSSSLFNSSLSKDSDKPPALSPLSLTDDDSDSPGTAPSKTPPPSSQSPPSQSPPSQPVSSPPSPSEANSPPPSPPPSSPPPQSSPPPPLPSPPPPDSSPPPSSPPPPKASSPPPTPSTPPLSPPPSSPPPTPPSQLPPSPPPPNANDSPPPSLSQPHSPPPPALPTPTLPSPASHVPPTLPPPPPTTGPLPNHPPPQQSPPVPPGSHTKPGTSPSKSHAPSTSPPSGDNNNTGQYVGFALAAVFVLAFIAVILYIILKRKNKLGSFYNVQPTRKSQMKGDVHYYVEEPGFGNGPQDGFYSFQPPHAGAVVQHLRTPSDPAQAQQMNTGQMVFSYDKVAEITNGFASENVIGEGGFGCVYKASMPDGRVGAVKLLKAGSGQGEREFRAEVEIISRVHHRHLVSLIGYCISEQQRVLIYEYVPNGNLNQHLHGSGRLVLDWPKRVKIAIGAARGLAYLHEGCNPKIIHRDIKSANILLDDVYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPVGDESLVEWARPLLLRAIESGDFGELVDPRLDRQYVDSEMFTMIEAAAACVRHSAPKRPRMVQVARALDSGDQLYDLSNGVKYGQSTVYDSGQYNEDIMRFRRMINGSFDDSEFDMYSTDYTSTEVSAPRHTWRPPSSGGDSEIRAFNSQRGSSDHRP. 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01481 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Seca10g01481 722 ProSiteProfiles Protein kinase domain profile. 359 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01481 722 Gene3D Transferase(Phosphotransferase) domain 1 435 646 - -
Seca10g01481 722 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 258 676 IPR047117 -
Seca10g01481 722 PRINTS Proline rich extensin signature 57 73 - -
Seca10g01481 722 PRINTS Proline rich extensin signature 96 121 - -
Seca10g01481 722 PRINTS Proline rich extensin signature 28 49 - -
Seca10g01481 722 PRINTS Proline rich extensin signature 78 95 - -
Seca10g01481 722 MobiDBLite consensus disorder prediction 51 223 - -
Seca10g01481 722 MobiDBLite consensus disorder prediction 224 243 - -
Seca10g01481 722 Gene3D Phosphorylase Kinase; domain 1 321 434 - -
Seca10g01481 722 FunFam proline-rich receptor-like protein kinase PERK8 435 647 - -
Seca10g01481 722 Pfam Protein tyrosine and serine/threonine kinase 362 627 IPR001245 GO:0004672|GO:0006468
Seca10g01481 722 CDD STKc_IRAK 365 633 - -
Seca10g01481 722 MobiDBLite consensus disorder prediction 1 243 - -
Seca10g01481 722 SUPERFAMILY Protein kinase-like (PK-like) 336 632 IPR011009 -
Seca10g01481 722 SMART serkin_6 359 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01481 722 MobiDBLite consensus disorder prediction 688 722 - -
Seca10g01481 722 FunFam Proline-rich receptor-like protein kinase PERK8 331 434 - -
Seca10g01481 722 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01481 Seca-Chr10 15941542 15945884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01481 111 708 Trihelix Transcription Factor Family AT1G70460 50.000 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca10g01481 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01481 - - gmx:100807815 754.207