Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01473 ATGTTGGGGGGCAACAATGGAAATCGCATTCTTCCTGTTTTCTTGGATGAGACTCAATTTCAGTGTCAAACTAATGCGGCAAATCAGTTGCAGTTGTTTGGAAATTCTTTTGATTGGAGTGTATCTGTCTGGCTCAATGCGTTTAATTTTACTTGCTGTTATGCTCTGTTTTTGGATTTTTTGTTCATCGTGTACTTCCAACAATTCTATCCTGCTTTAGTCCCTTTTGCCACAAGCATGGTGATGGCATCTCCTCTCCTTTTTTGGGTAGGGGTGGAAGGGTGTAACATTGTGGGTTATGGACTTGTGTTGTTTATTGCATGTGTGCATGTTTTGCTTGAGTGCATTGCATTACAAGCTGGATGTAGTGTTGATCCAGTTAATTACTTTGCAAATGAACATATGAATTCCATGATTTTACCTAATAAAAGAAGCAGGGAAATGGAAGATATCCCAAAGCAGCAAAGGCTTCAGATTTCCTTAAATTACAATGTCTGTCAAGATGATGCTGATCGATCAGCAAGTATTCCAAACCCTAACCCTGTTTCAACAGGATTGAGGCTTTCATACGATGATGATGAGCGTAACTCATCTGTTACTTCTGCTAGTGGCAGCATGACAGCCACACCTTCTATCATATTATCCCTTGGTGACAATATAAGAACTGAGCTTGATAGGCAGCAGGAAGAGTTGGACCAGTATATTAAACTTCAGAAGGAACAATTATCAAAAGGAGTAAGAGACATGAAGCAAAAGCACATGGCTTCTCTCCTTACTTCCATTGAGAAAGGTATTAATAAGAAGCTGAAGGACAAAGATGTGGAGATAGAGAACATGAACCGTAAAAATAGGGAGCTAGCTGAGAGAATAAAGCAGGTAGCTATTGAGGCACAAAACTGGCACTACAGAGCTAAGTATAATGAATCAGTTGTCAATGCATTAAGGAACAATCTCCAACAGGCAATTTCACAAGGAGTTGAACAAGGGAAGGAAGGGTTTGGAGACAGTGAAGTTGATGATGCTGCCTCATACATAGATCCCAATAACTTCCTGAGCATTCCAGGTGCACCTATGAAATCCATTTGCAAGAGCTACCAAGGCATGGAGAATCTTTCTTGCAGAGCATGCAAAGCAAAGGAGGTATCCATGTTGTTGATGCCTTGTAGGCACCTGTGCTTGTGTAAAGACTGTGATGGATTTATCAATGTTTGTCCTGTATGCCAATTGATAAAAACTGGTAGTGTCGAGGTGTATCTGTCTTAA 1263 0.4046 MLGGNNGNRILPVFLDETQFQCQTNAANQLQLFGNSFDWSVSVWLNAFNFTCCYALFLDFLFIVYFQQFYPALVPFATSMVMASPLLFWVGVEGCNIVGYGLVLFIACVHVLLECIALQAGCSVDPVNYFANEHMNSMILPNKRSREMEDIPKQQRLQISLNYNVCQDDADRSASIPNPNPVSTGLRLSYDDDERNSSVTSASGSMTATPSIILSLGDNIRTELDRQQEELDQYIKLQKEQLSKGVRDMKQKHMASLLTSIEKGINKKLKDKDVEIENMNRKNRELAERIKQVAIEAQNWHYRAKYNESVVNALRNNLQQAISQGVEQGKEGFGDSEVDDAASYIDPNNFLSIPGAPMKSICKSYQGMENLSCRACKAKEVSMLLMPCRHLCLCKDCDGFINVCPVCQLIKTGSVEVYLS. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01473 420 Pfam Zinc finger, C3HC4 type (RING finger) 370 408 - -
Seca10g01473 420 Coils Coil 217 244 - -
Seca10g01473 420 ProSiteProfiles Zinc finger RING-type profile. 373 408 IPR001841 -
Seca10g01473 420 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 357 419 - -
Seca10g01473 420 Coils Coil 269 296 - -
Seca10g01473 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 420 IPR013083 -
Seca10g01473 420 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 135 417 IPR017066 -
Seca10g01473 420 MobiDBLite consensus disorder prediction 171 205 - -
Seca10g01473 420 MobiDBLite consensus disorder prediction 171 185 - -
Seca10g01473 420 CDD mRING-HC-C3HC5_CGRF1-like 373 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01473 Seca-Chr10 15875906 15880406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01473 369 418 C3H Transcription Factor Family AT1G73950 38.000 1.22e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01473 K19042 - gmx:100791550 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01473 10 15875906 15880406 Seca10g01473 10 15875906 15880406 ECH