Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01470 ATGTTCATGTGGTTTTGTACCTATTTCTGTGTTGCATTTTTTTTTTCTGTTTTACAATTCAATTATGAGATGCAGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTTAGATGCGGCCACTGCACAAGCCTCCTCTCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCAAACAAGACTTTGAACAGTCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAGCAATGTTGTGAATAAACCCCCAGAAAAGAGACAGCGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCTCACAAGGAAGCTTTCAGCACAGCTGCAAAAAATTGGGCCAATTTCCCCCCAACTCAGTGCAAAGGAGATGAAGATAACTGTAGCCAGACAGATCAACCTGTGGATCTGGACTCCCATGTGGACCCTCAAGATGCAGAGGTCAATGAAGAAGGTCAAGGTTTCCGTGGAAGAAAGGTCCCAAGAAATTCTATCTTGGAAAGGACACCATTTGAGTGA 642 0.4237 MFMWFCTYFCVAFFFSVLQFNYEMQVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDVIPMSNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEDNCSQTDQPVDLDSHVDPQDAEVNEEGQGFRGRKVPRNSILERTPFE. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01470 213 MobiDBLite consensus disorder prediction 179 206 - -
Seca10g01470 213 SUPERFAMILY HMG-box 107 160 IPR036910 -
Seca10g01470 213 Gene3D High mobility group box domain 108 172 IPR036910 -
Seca10g01470 213 CDD HMG-box_SF 118 161 - -
Seca10g01470 213 Pfam YABBY protein 24 161 IPR006780 GO:0007275
Seca10g01470 213 MobiDBLite consensus disorder prediction 158 213 - -
Seca10g01470 213 MobiDBLite consensus disorder prediction 163 178 - -
Seca10g01470 213 FunFam Axial regulator YABBY 4 106 172 - -
Seca10g01470 213 PANTHER PROTEIN YABBY 6-RELATED 23 173 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01470 Seca-Chr10 15849793 15853047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01470 24 213 C2C2-YABBY Transcription Factor Family AT1G23420 55.882 1.52e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca10g01470 YABBY 5.9e-52 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01470 K25796 - gmx:100779415 339.347