Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01467 ATGTTAATAGAGATTAGATTTTGGTTGAAGATTCGTTCAGAACTTAATCCAAACAAAGTTATCCTAAGGGACCCTGCTGGCTTTACTTTTAATGTTTCTATAAGTATCGATAGGTGTAATAGGGCTGGATTTGTTTATGGAGTTGAAAACATCATTAGGCGCTATAACTTGAAGGAGAGTTACTGGGTGTTATGTACATATAAAGGGAACAGTGAGTTTGACATTAGATTAGTGACTGGATCATTGGAGGTCAATTATCCAAGGTTTGAGAGGGATGCAGATGTTGATGATAATGCTGTGGAGTATGAGGAGGATCCTAAGGAGGATGAGGATGATTCTGAGGAGCCCATATTTTTATGGGAAGTTACATTGACAGCGCCAGCTGCATTCGGTTCTAATGCTTTGCTGATACCAGCTAGGATTGTGAGGGAGATATTGAACAAGGATCAGAAAGTTGTTACTCTTATAGATGAGAGTGGTAGTTTAATTCCATGCAAGTTGCTGAATCCTAAAAGACGATCCAGTGAGCGGTACCTATCCGGTGGTTGGTATGACTTTATTCGGGGGGAAAAATTGAAGGTTGGGGATAAGATTAGATTTTACACCGATGATAGCATGAAAACTGTATCTGCGGTTGTGGAGCGCACTTGA 651 0.4025 MLIEIRFWLKIRSELNPNKVILRDPAGFTFNVSISIDRCNRAGFVYGVENIIRRYNLKESYWVLCTYKGNSEFDIRLVTGSLEVNYPRFERDADVDDNAVEYEEDPKEDEDDSEEPIFLWEVTLTAPAAFGSNALLIPARIVREILNKDQKVVTLIDESGSLIPCKLLNPKRRSSERYLSGGWYDFIRGEKLKVGDKIRFYTDDSMKTVSAVVERT. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01467 216 ProSiteProfiles B3 DNA-binding domain profile. 120 216 IPR003340 GO:0003677
Seca10g01467 216 Gene3D - 101 214 IPR015300 -
Seca10g01467 216 SMART B3_2 120 216 IPR003340 GO:0003677
Seca10g01467 216 SUPERFAMILY DNA-binding pseudobarrel domain 116 209 IPR015300 -
Seca10g01467 216 CDD B3_DNA 116 201 IPR003340 GO:0003677
Seca10g01467 216 Pfam B3 DNA binding domain 121 206 IPR003340 GO:0003677
Seca10g01467 216 SUPERFAMILY DNA-binding pseudobarrel domain 9 76 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01467 Seca-Chr10 15814046 15815326 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g01467 B3 4.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01467 - - mtr:11425977 53.9138