Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01461 ATGGATGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCCCTGATGACACCGGAGAATCTGATCTTCCCGGCGGACTACCACAGCTTCCTCATGTCCTCATCCGCCGCCGGCCGGATTCCCATGTTCGGATCCGACGACCTCCTCTCAGCGGAACCCTCCTCCGCCGTGGCCACTCCCGCTGGAATTCAACGGCAAGAGGACGACATGGCCTCCACCGTCATGAAAGCCAAAATCGCTTCTCATCCTCACTATCCTCGCCTCCTCCAAGCTTACATCGACTGCCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGGGACGTTGTGTCTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTTGTGAAGTATAAATCAGACTTGGCTCGGCCTTTTGACGAAGCGACCACCTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACCGGTGCTTCCGTTCCCACCCTTTCTGGTCTGTTCTTCTCTCTCTTCCGTTTTCGATTTCTCTCTCTCTCTCTCTCTCTGCTATCTATCAGTATAGCAGTAAGTAATGGTGATGCGCAAGATGGACAATTAAGGGGAGAAGATCGTGAGCTCAAGGACAGGCTTTTACGCAAGTTTGGGAGTCACATTGGAACATTGAAATTGGAGTTTTCAAAGAAGAAAAAGAAGGGTAAGCTTCCGAAGGAAGCAAGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATCTGACCGGACGATTCCTTGCCGATGAATGA 993 0.5045 MDEMYGVPSTAEYADKALMTPENLIFPADYHSFLMSSSAAGRIPMFGSDDLLSAEPSSAVATPAGIQRQEDDMASTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKRDVVSSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVPTLSGLFFSLFRFRFLSLSLSLLSISIAVSNGDAQDGQLRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLTGRFLADE. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01461 330 ProSitePatterns 'Homeobox' domain signature. 285 308 IPR017970 GO:0000981|GO:0006355
Seca10g01461 330 ProSiteProfiles ELK domain profile. 227 247 IPR005539 GO:0003677
Seca10g01461 330 Pfam ELK domain 227 248 IPR005539 GO:0003677
Seca10g01461 330 CDD homeodomain 259 311 IPR001356 GO:0003677
Seca10g01461 330 SUPERFAMILY Homeodomain-like 248 319 IPR009057 -
Seca10g01461 330 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Seca10g01461 330 SMART ELK_2 227 248 IPR005539 GO:0003677
Seca10g01461 330 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
Seca10g01461 330 Pfam KNOX1 domain 78 119 IPR005540 GO:0003677|GO:0005634
Seca10g01461 330 Gene3D - 246 320 - -
Seca10g01461 330 SMART HOX_1 249 314 IPR001356 GO:0003677
Seca10g01461 330 ProSiteProfiles 'Homeobox' domain profile. 247 310 IPR001356 GO:0003677
Seca10g01461 330 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Seca10g01461 330 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 317 - -
Seca10g01461 330 Pfam Homeobox KN domain 267 306 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01461 Seca-Chr10 15688518 15696203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01461 1 330 Homeobox Transcription Factor Family AT1G23380 63.450 5.71e-145 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca10g01461 KNOX2 3.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01461 - - gmx:100794719 479.944