Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01459 ATGAAGAAAGTAGTCTCTCTCATCTCTTCTCAGTGCCTTGTGTTCCTTCTCATCAAGTTTCTATTACTATCAGAAACTGTAATGGCAGAACCAAGGGCCAAGACAGTCCTAATAACGTGTGGCCATCAACTAGAGCACAACACCACTATCTTTGTTCCAAATTTTGTTGCAACTATGGAGAAGATCAGTGAACAGATGCGCAGTACTGGTTTTGGCACAGCAATTACAGGGACAGGACCTGATACTAACTATGGCCTGGCCCAGTGCTATGGAGACCTTTCATTACTTGACTGTGTGTTATGTTATGCTGAGGCACGCACGGTTCTTCCTCAGTGTTTCCCTTATAATGCTGGTCGCATTTACCTTGATGGTTGCTTCATGAGGGCTGAGAACTACAGTTTCTTTAATGAGTATACAGGACCAGGAGACAGAGCTATATGTGGGAACACAACTAAGAAGAACTCAGGTTTTCAAGCAGCAGCAAAGCAGGCAGTTTTAAGAGCAGTTCAAGATGCACTCAACAACAAAGGCTATGCCAGGGGAAAGGTTGCTGTATCAGGAACAACAAACGAATCTGCTTATGTTCTGGCTGATTGTTGGAGGAATTTGGATACAAGCTCTTGCAAAGCTTGTCTTGAGAATGCATCTTCTTCCATATTGGGATGCTTGCCCTGGTCAGAAGGAAGAGCACTCAACACCGGGTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAACAGGACAGTGGGAGTTCAAGAGGAAATGTAGTAGTGATTGTGGTTGCAGTAGTCAGTTCACTGATTGTTTCGGTTGTTGGAGTAACTATTGGGGTTTATATCTGGAAACAGAGATACATTCAAAAGAAAAGAAGAGGTTCAAATGATGCGGAAAAGTTAGCCAAGACTCTTCAGTACAAAAGCTTGAATTTCAAGTACTCTACACTGGAAAAGGCTACTGAATCTTTTCATGACAATAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTGGTGTGGAACACAAAAATCTAGTCAGACTGTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTGCTTGTATATGAATTTCTGCCCAACAAAAGTCTTGATCGCTATCTTTTTGATAAAAACAAGGGCAGAGAACTGAACTGGGAGAAGAGATATGAAATTATCATCGGGACAACTGAAGGATTAGCTTACCTGCATGAGAACTCCAAAATCAGGATAATTCATAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAAGCTTCGTGCTAAAATTGCAGATTTTGGTTTGGCCAGGTCCTTTCAAGACGACAAAAGCCACATAAGTACAGCTATTGCAGGAACTTTGGGGTATATGGCTCCAGAGTATCTAGCTCATGGTCAATTAACAGAAAAGGCAGACGTATATAGTTTTGGAGTGTTGCTGCTAGAGATAGTTACTGGTAGACAGAACAACAGGAGCAAAGCATCGGACTATTCAGACAGCTTAGTTACAGTGACATGGAAGCATTTTCAGTCAGGGACTGCCGAACAATTATTTGATCCAAATCTACAGTTGCATGATGACCACAATAGCGATGTTAAGAATGAGATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGGTCCCTACATTACGACCAACCATGTCAAAGACACTACAGATGCTAACAAAGAAGGAGGAGGATCTTGTTGCTCCCTCTAATCCACCATTCCTAGATGAGAATACCATGGAACTCCATGACATAAGCGGTGACCCATTTTACCCTCTCAATGCAGCTGATTCAATCGCTACTATGTCCCGTAGCTCTTTTTATCCCAGGTGA 1953 0.4183 MKKVVSLISSQCLVFLLIKFLLLSETVMAEPRAKTVLITCGHQLEHNTTIFVPNFVATMEKISEQMRSTGFGTAITGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNAGRIYLDGCFMRAENYSFFNEYTGPGDRAICGNTTKKNSGFQAAAKQAVLRAVQDALNNKGYARGKVAVSGTTNESAYVLADCWRNLDTSSCKACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEQDSGSSRGNVVVIVVAVVSSLIVSVVGVTIGVYIWKQRYIQKKRRGSNDAEKLAKTLQYKSLNFKYSTLEKATESFHDNNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISGVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRYLFDKNKGRELNWEKRYEIIIGTTEGLAYLHENSKIRIIHRDIKASNILLDAKLRAKIADFGLARSFQDDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIVTGRQNNRSKASDYSDSLVTVTWKHFQSGTAEQLFDPNLQLHDDHNSDVKNEILRVVHIGLLCTQEVPTLRPTMSKTLQMLTKKEEDLVAPSNPPFLDENTMELHDISGDPFYPLNAADSIATMSRSSFYPR. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01459 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 621 - -
Seca10g01459 650 Pfam Protein kinase domain 324 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01459 650 SMART serkin_6 324 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01459 650 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
Seca10g01459 650 FunFam Cysteine-rich receptor-like protein kinase 3 143 244 - -
Seca10g01459 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Seca10g01459 650 CDD STKc_IRAK 330 601 - -
Seca10g01459 650 Gene3D - 144 244 IPR038408 -
Seca10g01459 650 Gene3D - 33 134 IPR038408 -
Seca10g01459 650 ProSiteProfiles Protein kinase domain profile. 324 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01459 650 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Seca10g01459 650 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Seca10g01459 650 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Seca10g01459 650 SUPERFAMILY Protein kinase-like (PK-like) 308 620 IPR011009 -
Seca10g01459 650 FunFam Cysteine-rich receptor-like protein kinase 2 400 607 - -
Seca10g01459 650 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Seca10g01459 650 FunFam Putative DUF26-domain receptor-like protein kinase family protein 292 399 - -
Seca10g01459 650 Gene3D Transferase(Phosphotransferase) domain 1 400 610 - -
Seca10g01459 650 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Seca10g01459 650 Pfam Salt stress response/antifungal 49 132 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01459 Seca-Chr10 15671467 15676685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01459 17 650 Receptor kinase-like Gene Family AT1G70520 68.809 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca10g01459 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01459 - - gmx:100305420 1136.71