Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01424 ATGGAGGAAGCCCTCAGGCGTCTCAACGGTATGGCCCCGATTCCAGAACCCGAACCGCAGGGTCCCGACAACCAGAAGCGGTCTTCCGCCGCCAACAAGAGGACACTGCGAGAAAACAACGGCAGCGGCGGAGGAGGAGGAGTGATGAGGTACCGCGGCGTGAGGCGCAGGCCGTGGGGCCGTTACGCCGCCGAGATAAGAGACCCACAGTCAAAGGAACGGCGCTGGCTGGGCACGTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGTGCCGCACGTGCGATGCGTGGCTTGAAGGCTCGCACGAACTTCGTGTACCCAACCTCTCCACCTCATCACTCTTCCGCTACTCAACACCCCCTTTTCCCTCCCTTCAACTTCCCCAAGCAACCTTTCAACAAAACCACCACCCCTAACCGCCACGTGTCCACTTGTTGGCCATCTTGCTCTGATCCTCACGCTATTGAGTTCTCACCTGCTTCACCTCACCACCAGCCAAACTCTTCTTCCCTTGACATGCTTCTGTTTCGTGAGTTTCTCAACTCTTCTTCTTCATCATCTAACCCTTCCTTGGTTTCACCCTTTTACGACAACAAGAGCATTTCTTCCTCCTCCTCCTCTTCTTCTTCTCCGTCCATTCCCACCCCTTTTCTTCCAGGTTGCTGTTTGGTGAATTCATGTGGAGGCAGTGCTAATAGCGTCTGTGGCTCTTCTTCCCTAAACATAAACACCAATCCAGCTTTTGTCGCCACCAAAACCACTGAACCTGATGAGGAAGACTCGGAATTCTTTCCAAGAGAGTCTTCTGACTCTGGATTGTTGGAAGAGATAGTCCATAAATTCTTGCCTAAATCAAAGCCCAAAAAATCCCACCAGAGTCCCCCAAAGGCAGAGACTTTCTACAACCCTGAATCATTTCCTCCACCTGCACCTCATCAAATGCTCTTTTCCACCCCTCAATGTCACAACCAGACGAAAAGGGGGATTCCCAAGAACGAGGGTTTTGGCGTCTCTTTTGATCACCACCACCAAAGTTTCACCATGCAGCAATTGGACGCTTTTAATAGCGTGCAGCAGGGTATGCCTCTGGGGAATGAACAACTCATGATGAATCATGCGGAGAATTACTCTATCTTACAAGATATTTTTCAATACCCAGACCTTATCAACACTTTTGCACTCAGGATGCAAAATGCTTAG 1206 0.5141 MEEALRRLNGMAPIPEPEPQGPDNQKRSSAANKRTLRENNGSGGGGGVMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPHHSSATQHPLFPPFNFPKQPFNKTTTPNRHVSTCWPSCSDPHAIEFSPASPHHQPNSSSLDMLLFREFLNSSSSSSNPSLVSPFYDNKSISSSSSSSSSPSIPTPFLPGCCLVNSCGGSANSVCGSSSLNINTNPAFVATKTTEPDEEDSEFFPRESSDSGLLEEIVHKFLPKSKPKKSHQSPPKAETFYNPESFPPPAPHQMLFSTPQCHNQTKRGIPKNEGFGVSFDHHHQSFTMQQLDAFNSVQQGMPLGNEQLMMNHAENYSILQDIFQYPDLINTFALRMQNA. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01424 401 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 251 - -
Seca10g01424 401 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Seca10g01424 401 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Seca10g01424 401 MobiDBLite consensus disorder prediction 1 52 - -
Seca10g01424 401 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Seca10g01424 401 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Seca10g01424 401 MobiDBLite consensus disorder prediction 22 39 - -
Seca10g01424 401 MobiDBLite consensus disorder prediction 111 140 - -
Seca10g01424 401 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Seca10g01424 401 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Seca10g01424 401 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Seca10g01424 401 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
Seca10g01424 401 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01424 Seca-Chr10 15330299 15331504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01424 48 299 AP2-EREBP Transcription Factor Family AT1G24590 41.473 9.77e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca10g01424 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01424 - - vum:124821082 331.257