Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01401 ATGGATGCTCCCAGAGGATCCGACTCCGAACCCGAAAACCCAATCGCCGCGTGCACCGCCATGCTTTCCCTCCGCCACTTCTCCGCCTGCCGCGACTTCGCCAGCCGCCTTCCACTCTCCGACTCCGTCTCCCGAATCCTCGCCATCGCCGACGTCCTCTCCGCCGCCGACTTCTACTCCGTCCTTCAGCTCCCTCGCGCCGACGTCGTCGACCGCGAACTCGCGCGGCGGCAGTACGCTAAGCTTGCGCTCCTTTTGGACCCTACCCTTACTGACAAGTTCCCCTTCTCGGACGAAGCCCTCGCACGTGTTCACGAGGCCTGGCACGTGCTCTCCGACACGGAAAGATGCGCTCTCTACAACCGCGACTTCGAACTGCGCCGTTGCGGCGACCAGATGGAGACGTTTTGGACTGCTTGTCCCTACTGTTGGAACCTTTTCCAGTACGAGAAGATGTACGAGGATTGCTCGCTGCTTTGCCAGAGTTGCCAGAGAGTGTTTCACGGCGTGGCGGTGAAGCCGCCGGAAAAGGTGGGGGAACCGGTGGTTGAAGGGGAGGAGCGGCGGCAGTACTATTGGTGTCGCGCGAGTGTGCCCTTGAAGTATTATGAAGTGAAGGAGAAGGTGGAGGATGGTGATAAGAACTTAATGGATGAAAAAACCACTCAATTTGTGTATATTTCCGATGATGATGATGGGGAAGATGCAGGGTTTGGGAAGAAGGTGGGACAGGGAGTGGGGGGTGATGTGAGAAATGAAGGGTTTCAGGGGAATGGAAGTGTGGAGCATCAAGCCAATGGGAAGCGCCGGATGAGGATAAAGACTGTGGCAAAGAAGGTTGCTGGGAAGAGGATGGCAAGGTGTCTTGATTCCGATAGTGATTTGGATTTGGGGTCGGATGGGGGAGATGGTGAATTGGAGTTCACAGAAGCAGATGGTGATGTCTTTGTTGGTGTAAGTCAAGATGCTGAGCTTCTCAAATATTGGTTCTTCTTCAGTTTTCTGGTAACACTGTTCATCGTATATTATGTTATTGGAAATCACAAGAACATGTATGTTGTCCATGTTGAGCTCAGAAACGATGGAATTACTGTGAATTTATTTCTTCAAATCCAAAGGTGCTTCCAAAGGCAAATATTTCCCAATCTTCCTCGCTTAGCAGCAATTGCATTTTACTTGCCTCTTTTAGCATACAAGCTTGCAAATCAGTTCAATTCAATGGTTTTACTTCGACAGTTAGAGCAGGGAATGCATCATGTTCGAAATTACTATAACTCAGAAATGCTAAGAAGTAGCTTTCCAAGGCCATTCATCTCACATACATACAAAAACAGTTTCTCAAAGCCAAGATCAAAGGCAGAGATCAGATTGCTGGCTGCTAAGAAACATAGTGAAGCCGAAAAGAGACGTAGAATGCGAATCAATGGTCAATATGACACCCTCCGCAGTATCCTCCCCAATATAATCAAAAAGGACAAGGCCTCAGTACTGGGAGAGACAATCAAGCAAGTGAAGGAGCTGAAGAAAATAGTATCAAACGTGGAAGAAAATAATATTGGTAGCTCAAAGGAGGTTAAGTTTCCAAGTGGGGCAGACAAACTGAGTTTGGAAAAATGCAATGAGGAGGAGGGTCTAGTGAAGGCCATGTTGAGTTGTGAGGATAGGCCAGGATTGATGTCAGCCATAGCAGGGGCACTGGGGTCAGTGAAAGCCAAAGCAGTAAAGGCTGAGATGGTTATGGTAGGTGGAAGAGCCAGAAGTGTGTTGTGGGTAAAAGGTCATGGGAATGAAGGTCTGGGGATGCTCAAGAGTACTGAGGGTTGTCATGATGCATAA 1836 0.4924 MDAPRGSDSEPENPIAACTAMLSLRHFSACRDFASRLPLSDSVSRILAIADVLSAADFYSVLQLPRADVVDRELARRQYAKLALLLDPTLTDKFPFSDEALARVHEAWHVLSDTERCALYNRDFELRRCGDQMETFWTACPYCWNLFQYEKMYEDCSLLCQSCQRVFHGVAVKPPEKVGEPVVEGEERRQYYWCRASVPLKYYEVKEKVEDGDKNLMDEKTTQFVYISDDDDGEDAGFGKKVGQGVGGDVRNEGFQGNGSVEHQANGKRRMRIKTVAKKVAGKRMARCLDSDSDLDLGSDGGDGELEFTEADGDVFVGVSQDAELLKYWFFFSFLVTLFIVYYVIGNHKNMYVVHVELRNDGITVNLFLQIQRCFQRQIFPNLPRLAAIAFYLPLLAYKLANQFNSMVLLRQLEQGMHHVRNYYNSEMLRSSFPRPFISHTYKNSFSKPRSKAEIRLLAAKKHSEAEKRRRMRINGQYDTLRSILPNIIKKDKASVLGETIKQVKELKKIVSNVEENNIGSSKEVKFPSGADKLSLEKCNEEEGLVKAMLSCEDRPGLMSAIAGALGSVKAKAVKAEMVMVGGRARSVLWVKGHGNEGLGMLKSTEGCHDA. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01401 611 Gene3D DnaJ domain 50 135 IPR036869 -
Seca10g01401 611 Gene3D - 458 518 IPR036638 GO:0046983
Seca10g01401 611 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 279 - -
Seca10g01401 611 Pfam DnaJ domain 57 121 IPR001623 -
Seca10g01401 611 Coils Coil 497 517 - -
Seca10g01401 611 SUPERFAMILY Chaperone J-domain 50 122 IPR036869 -
Seca10g01401 611 ProSiteProfiles dnaJ domain profile. 57 134 IPR001623 -
Seca10g01401 611 Pfam Helix-loop-helix DNA-binding domain 461 507 IPR011598 GO:0046983
Seca10g01401 611 CDD DnaJ 57 113 IPR001623 -
Seca10g01401 611 SMART finulus 464 513 IPR011598 GO:0046983
Seca10g01401 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 516 IPR036638 GO:0046983
Seca10g01401 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01401 Seca-Chr10 14501729 14508345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01401 9 279 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 27.362 3.40e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g01401 DnaJ 5.1e-07 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01401 - - tpra:123904328 338.961