Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01392 ATGGCTCTTCCCGGTTCACTGCAGCTGTCCCATGGATTGGGACTTTGCAGGAACCTGGGCTACAATAAACATCCGAGGGTAACAGGAAGATGCAAATTACATTTATCAAATGCAGGTCCCTCATATCCTGTTTTGTTCATGAAACAGGACTACTGGGGTTTTCAACACCTTCGTCATATAAGCAGGTCAACACATACATTGTCTTGCAAATCTCGCTCTTTTAAGTGTCATTGTTTTCTAGTGCCAGGCCAACCAAGTAAGCTTCCTACTGTTGAGGTGGCTACTACAGTGCTGGCAAGGTGTTGTAATGTGTTACAAAATAGTCCAGTCATTGTAAAGTTGATTCCTGCTGTTGGCATTATCATTTTTGCAGTATGGGGTGTCGGTCCATTAATGTTTCAGACAAGGAAACTGTTTTTTCAGCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCATTATGTAGTAACTTCTTACCTTCAGCCATTGCTGTTATGGACTGGAGCCATACTTATTTGCAGAGCATTGGAGCCAGTAATTCTACCTACAGAAACTGGCCAGGTTGTTAAGGAACGGCTTTTGAATTTTGTAAGATCATTGTCGACTGTACTGGCCTTTGCCTACTGTTTATCTAGTGTAATTCAACAAGCACATAAATTTTTCACGGAGAGTGCTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCAGGCAAAGCTGTTTATTCTGCAGTATGGATTGCTGCCTTTTCATTGTTCATGGAATTGCTGGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGAACAGTTTTGTTAACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGCGCGATGATTCATGCAACCCGGCCATTTGTGGTTAATGAATGGATTCAAACAAAGATAGAAGGATATGAGGTTTCTGGCACTGTTGAGCATGTTGGTTGGTGGTCACCAACAATTATCAGAGGTGAAGATCGTGAAGCTGTACACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAGAAAACACATTGGCGAATCAAAACCCACCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAAGTATTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAATATAAATCCTGAAAATCAGGCTCTTATGATTCTGGTGTCTTGTTTTGTCAAGACCTCACATTTTGAAGAATATTTATGTGTTAAGGAAGCCATACTATTGGACCTTCTTAGAGTTATCGGCCATCACCGGGCCCGACTTGCAACACCAGTCCGTACCCTGCAGAAAATATACAGTGATGCTGACTTGGAGAACATACCATATGCAGATTCCACATTTAGTGGTGCTGGAACAGTATCTAACCGTCCATTATTAATGATTGAATCATCTCACAAGATCAATGGAGATGATAAGATGAAAAGTCGATCAGCACGACCAGCTGTTGATCAAGATAACAAGACTGCACGAACCAAACATGAAACAAAGACAGACGACAAGGCAGGACCAACAGGAGTACCAGATAACAAGGTTAGAGGAACTCAAGATGACTCTGAGGTGGATACCAAAGTTGTGGTATCTATTTCTGATGCAAATGGAAACTCTAAGACTGCTGTGACACCCAGACCTGATCCTGAAGTGGGTGAAAACAAGCCACTGAAATCAAATTCAAACAAGGCAAATGTGGAGGTTCCAGATATGTCTTTTAACTCCGAAATATCTGCTTTGGCAGTGGATAATTCAACCCAGAAGGACATACATGTCAAACAATCCAAGGTTGAGACCATTAAAAACATCAAGCCGAACATTGACTCTGACAATGTAGTTTCCTCCTCCTCCTCGACTAATAATGCTGACAAAGCAAGTGGACTTCCTACGAATATGCCAACAAAACAGCAAGGAGAAAGGAAACCTATTGCACAGCCTCATGCATCCAGGCCTGTTCTTGAAGAGAACATAGTACTGGGTGTTGCATTGGAGGGATCAAAGAGGACCCTTCCCATTGATGAAGGGATTGACACTATGACAACTCAAGAGTCAAAGGAAATGGCTGCATTCCAGGGCGGAAATGGATCTCCAAAGGCCGCCGACGGGAATGTCAAGTGA 2196 0.423 MALPGSLQLSHGLGLCRNLGYNKHPRVTGRCKLHLSNAGPSYPVLFMKQDYWGFQHLRHISRSTHTLSCKSRSFKCHCFLVPGQPSKLPTVEVATTVLARCCNVLQNSPVIVKLIPAVGIIIFAVWGVGPLMFQTRKLFFQQRSDNSWKKSTTHYVVTSYLQPLLLWTGAILICRALEPVILPTETGQVVKERLLNFVRSLSTVLAFAYCLSSVIQQAHKFFTESADASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKIYSDADLENIPYADSTFSGAGTVSNRPLLMIESSHKINGDDKMKSRSARPAVDQDNKTARTKHETKTDDKAGPTGVPDNKVRGTQDDSEVDTKVVVSISDANGNSKTAVTPRPDPEVGENKPLKSNSNKANVEVPDMSFNSEISALAVDNSTQKDIHVKQSKVETIKNIKPNIDSDNVVSSSSSTNNADKASGLPTNMPTKQQGERKPIAQPHASRPVLEENIVLGVALEGSKRTLPIDEGIDTMTTQESKEMAAFQGGNGSPKAADGNVK. 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01392 731 Gene3D - 195 298 - -
Seca10g01392 731 MobiDBLite consensus disorder prediction 711 731 - -
Seca10g01392 731 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 714 IPR045042 -
Seca10g01392 731 MobiDBLite consensus disorder prediction 550 569 - -
Seca10g01392 731 MobiDBLite consensus disorder prediction 496 591 - -
Seca10g01392 731 MobiDBLite consensus disorder prediction 628 664 - -
Seca10g01392 731 SUPERFAMILY Sm-like ribonucleoproteins 284 354 IPR010920 -
Seca10g01392 731 Pfam Mechanosensitive ion channel 241 447 IPR006685 GO:0016020|GO:0055085
Seca10g01392 731 MobiDBLite consensus disorder prediction 496 535 - -
Seca10g01392 731 MobiDBLite consensus disorder prediction 628 677 - -
Seca10g01392 731 Gene3D - 300 355 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01392 Seca-Chr10 14373285 14380976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01392 9 731 Mechanosensitive Ion Channel Family AT5G10490 54.258 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01392 K22047 - gmx:100789444 1174.84