Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01386 ATGGATGCAACCAGAACAGATAAAATCTATGTTGCTGTTGGTAATGATGCCCAGGATGGATTCAAGACCTTGAATTGGGCTCTTAGGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTCCATGTAACTCATAACATCTCCAAAGATTATGTTTATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAATGATGAGAAACTTGAAGTTCTCAAGAAAGATGAGCAAGACAAAATCAACAAGCTGTTTTCCAAGTATATTGCTTTCTGTGGCAAGGTGTGTGTACCAGCAGAAATTCTTGAAGTTGAGAAATTTGATGAACCTATGCAAAAGCGCATCCTAGACTTGATCTTTGGTCTAGGAATAACCAAATTAGTCATGGGATTTTCATTCATGAAGCCCTCCTTGAAATCAAGAGGTGCCATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTGCTTTTTGTGAATTGTTCATTGTTTGTGCTGGGAAGCAAGTTTACCTTAGGGGAAGTAATGATGAGAAAATCATGGAGGATGATAATGGAGTCATGGTTGCAAGAATGAGAGATAAGATAACTTTCAAAGATTGGCTAGACAAAATGTTCAATGACAAAACCAATGATTCCCAAGATAAAAGTGCATCTCCTTCCTCAAACAATTCTGTGACCCAAAACCAGTGGGGATTTTATCTCCAAGAAATTGAAAATTATTATCAAGAATTGTTATCTTCAAATTTGGAGGAAGGAAGCTACGGGCAGGATAATGACGACTCGCAGATTAGTCCAATTGAGACAGATGTCACTGAACAGAACAATTCTAATATGAGTGCTGCAGAAAAAATTGAGATCCTAAAAAATAAACTGAGAGATGCTCGCAAAACCATCCAATTGAAGAGGAAAGAAGCCAGTCACAATCTAGAGAGACACACAAAAGCTGAATGGGCAATTTGTTTATGCAACAGTCGGACTGAAGAAATTGAATGTCGAATAAGGGAAGAGGTGAGTGTGAGGGAAGAAATAAAGAAGGAAGTGTATGCAGAGAAAGAGCAAATACGTGAAATGAGAATGGACATTGAAGAGAAGAAGAGGAGGGTGAGTTCATTGGCGGAACTGCAATCAGAGATGTCAAACAGGCTTCAGATTTCGACGGTGGCAAGGTCAAGAGCGGAGGCACAGCTAGAGAGAGCGGTGGGTGATAGGAGGGAAATGGTGAGAGAGATTGAGGATCTGAGGAGGCAGAGGGATGTGCTTAACAGAAGGATCGAGTTTTGCAAGCAGAAGGATGCAATTGGGATGGCTGCGAGGATGAGTGACACGTGTTGCAATTTCAGAGAGTATAAGGAGGAGGAGCTGAGGTTGGCCACAGATAACTTCTCAGAGAGGTTGAGGTTGAAGTCCGGTGGGGATTGGAGCAATGTGTATAGAGGAAGGTTCAACCATTCCACTGTTGCAATCAAGATGCTCTCTTCTTATACTACTTTGTCTCAACAAGATTTCCAATCCAAGATGAGGCTTCTTGGTGATATTAGGCAACCTCATCTGGTTGCCATGGTGGGCTTTTGCTCTGAGCCCAAATGCATAGTTTTGGAATATATGTGCAATGGAAGCTTGCGAGACATGCTGTTTTCAAGAAGAAGAAACCGGGCTTTACGGTGGCACGACAGGATACGAATAGCGGCAGAAGTTTGCTCGGGCCTAGGCTATCTTAATGCAGTGAAGCCAAGGCCCATTATCCATTGTCATTTGAGCCCAGCCAACATCCTCCTAGACCGAAATCTGGTTGCAAAGATCACCGGCTTTGGACTTCAAGATTGCCATGACGAGGAATGTTGCGTTGAATCAGATTTGCGGGCTGTAGGGGTTTTGTTGATGCAGCTTTTGACCGGAAGAAATTGGGCTGGGCTCGTCGAGGAGGCCATGACAGTGGATATGGATAATGAGACTTTGATTACCGTTCTTGATGATATGGCTGGACAATGGCCATTGGATCTAGCGAAAGAACTTGCGGGCCTAGCGATGAGGTGCATGTACATTAAAAGGAAGCCCAACCCAGAATTGAGCATTGCAAAGGTCTTGGAGGAACTCAATAAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAGGGAAGGACGAAAGGTTATCATTGGCGGATGTATAGATAGAGAGAGCCCTGGCGATGTACCTAGTGTTTTCCTTTGCCCTATACTACAGGAGGTAATGAAAAACCCACACGTGGCAGCAGATGGATTTTCTTATGAGCTGGAAGCAATAGAGCAGTGGTTGCAATCGGGGCATGACACGTCACCTATGACAAATTTGAGGCTGAAGCATACATTCCTTACACCGAATCAAACCCTTCGTTCCTTAATTGAGGACTGGAAGAGCAACAATACATCTAAAGTTGCAAATTAA 2418 0.4285 MDATRTDKIYVAVGNDAQDGFKTLNWALRKWNSHPISIVILHVTHNISKDYVYTPFGKLPARSVNDEKLEVLKKDEQDKINKLFSKYIAFCGKVCVPAEILEVEKFDEPMQKRILDLIFGLGITKLVMGFSFMKPSLKSRGAISGLFYVHQHKPAFCELFIVCAGKQVYLRGSNDEKIMEDDNGVMVARMRDKITFKDWLDKMFNDKTNDSQDKSASPSSNNSVTQNQWGFYLQEIENYYQELLSSNLEEGSYGQDNDDSQISPIETDVTEQNNSNMSAAEKIEILKNKLRDARKTIQLKRKEASHNLERHTKAEWAICLCNSRTEEIECRIREEVSVREEIKKEVYAEKEQIREMRMDIEEKKRRVSSLAELQSEMSNRLQISTVARSRAEAQLERAVGDRREMVREIEDLRRQRDVLNRRIEFCKQKDAIGMAARMSDTCCNFREYKEEELRLATDNFSERLRLKSGGDWSNVYRGRFNHSTVAIKMLSSYTTLSQQDFQSKMRLLGDIRQPHLVAMVGFCSEPKCIVLEYMCNGSLRDMLFSRRRNRALRWHDRIRIAAEVCSGLGYLNAVKPRPIIHCHLSPANILLDRNLVAKITGFGLQDCHDEECCVESDLRAVGVLLMQLLTGRNWAGLVEEAMTVDMDNETLITVLDDMAGQWPLDLAKELAGLAMRCMYIKRKPNPELSIAKVLEELNKIRRKGDEIVAREGRKVIIGGCIDRESPGDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEQWLQSGHDTSPMTNLRLKHTFLTPNQTLRSLIEDWKSNNTSKVAN. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01386 805 SUPERFAMILY Protein kinase-like (PK-like) 444 697 IPR011009 -
Seca10g01386 805 Coils Coil 343 373 - -
Seca10g01386 805 Pfam U-box domain 729 799 IPR003613 GO:0004842|GO:0016567
Seca10g01386 805 ProSiteProfiles Protein kinase domain profile. 461 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01386 805 Coils Coil 388 429 - -
Seca10g01386 805 CDD RING-Ubox_WDSUB1-like 730 785 - -
Seca10g01386 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 804 IPR013083 -
Seca10g01386 805 Pfam Protein tyrosine and serine/threonine kinase 470 608 IPR001245 GO:0004672|GO:0006468
Seca10g01386 805 Gene3D Phosphorylase Kinase; domain 1 432 534 - -
Seca10g01386 805 ProSiteProfiles U-box domain profile. 728 802 IPR003613 GO:0004842|GO:0016567
Seca10g01386 805 Gene3D Transferase(Phosphotransferase) domain 1 535 710 - -
Seca10g01386 805 PANTHER OS02G0152300 PROTEIN 9 793 - -
Seca10g01386 805 SUPERFAMILY RING/U-box 724 800 - -
Seca10g01386 805 Coils Coil 276 303 - -
Seca10g01386 805 SMART Ubox_2 732 795 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01386 Seca-Chr10 14307245 14312625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01386 3 805 U-box Gene Family AT5G65500 49.630 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca10g01386 PK_Tyr_Ser-Thr 1.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01386 - - gmx:100786771 1282.7