Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01384 ATGGCATCAACTGGTAATCACGGAAAAGAGTTTTCGAGCGACGATGAGGGATCTCCGAGAGGAATACTGGACACCTCTGTTTCAGGGACAGAGTCAGACAACAGCGGAAGTGGCAGTTTTAGCTCCTGTTCGACGGAGAAGTTGCCGGCAACAGAAAGACCAGCTAGCCGAGAAAGTCACGTGCAGCAATTTATGTCTATGATTGACGTTTTCAAGTTCAAATCAGTGCGAAGATTATCAGCCATTCCTCTGCTTTCAGCAAGCCACGATATCACTAAGAAAGGCTTCACGAAAAAGTTGGCTCGTATTCGAAGTGCCGAAGATAGTATCGATATTGGAGCTATTCCTACGAAGCCCTCTTGGCGGAACTTCGATTATGCAGAACTCGCAGCTGCTACTCAAGATTTCAGTTCTGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTATACAAAGGTGTCTTACCCGATGGTCAAGTTATAGCAGTAAAGAGGCTAATGAAGAATGAAAAGGATGCTGCAGATAGAGCTGGTGATTTCTTAACAGAGCTTGGGATTATTGCACACATAAACCACCCAAATGCTACACGCCTTGTTGGGTTTGGGATTGAGCGTGGCCTCTACTTTGTCCTACAATTTGCTCCACATGGCAGCCTTTCTTCTTTGCTTTTTGGTTCTGAATGCTTGGAGTGGAATATAAGGTTCAAGGTAGCTCTTGGGGTAGCAGAGGGATTGCTTTATCTCCATAAGGATTGCCCAAGACGAATCATTCACAGGGATATCAAAGCTTCCAACATATTGCTCAACGAAAATTATGAACCTGAGATTTCAGATTTTGGACTAGCAAAGTGGCTCCCAAATAAGTGGGCCCATCATGTTGTATTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCAGAGTACTTTATGCATGGTGTTGTGGATGAGAAGACTGATGTATTTGCATTTGGGGTCTTGTTACTTGAGCTCATAACAGGTCGTCGTGCAGTTGATTCAGACAGTAGGCAAAGTCTTGTGATCTGGGCCAAGCCATTGCTGGACTCAAACAATGTGAAGGAAATAGCAGACCCCAGATTAGGTGAGAACTATGATCCTACTGAAATGAAGCGTGTGATGATGACAGCTTCTATGTGTGTCCACCATTCATCCTCCAACCGGCCATACATGAATCAGGTTGTGCAGCTACTGAAGGGTGAAGAGACGTGTGAGGCGTGTGATTCAGTTACACCAAAATCTCTCATGTTAGAGGCATGTGATTTAGAAGATTATACTTGCTCTAATTACTTGAAGGACCTCAACCGCCATAGGGAACTAGTCATGGAGTGA 1347 0.4469 MASTGNHGKEFSSDDEGSPRGILDTSVSGTESDNSGSGSFSSCSTEKLPATERPASRESHVQQFMSMIDVFKFKSVRRLSAIPLLSASHDITKKGFTKKLARIRSAEDSIDIGAIPTKPSWRNFDYAELAAATQDFSSENLVGKGGHAEVYKGVLPDGQVIAVKRLMKNEKDAADRAGDFLTELGIIAHINHPNATRLVGFGIERGLYFVLQFAPHGSLSSLLFGSECLEWNIRFKVALGVAEGLLYLHKDCPRRIIHRDIKASNILLNENYEPEISDFGLAKWLPNKWAHHVVFPIEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVIWAKPLLDSNNVKEIADPRLGENYDPTEMKRVMMTASMCVHHSSSNRPYMNQVVQLLKGEETCEACDSVTPKSLMLEACDLEDYTCSNYLKDLNRHRELVME. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01384 448 SMART serkin_6 136 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01384 448 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 215 416 - -
Seca10g01384 448 MobiDBLite consensus disorder prediction 1 58 - -
Seca10g01384 448 ProSiteProfiles Protein kinase domain profile. 136 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01384 448 Gene3D Transferase(Phosphotransferase) domain 1 215 418 - -
Seca10g01384 448 Pfam Protein kinase domain 138 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01384 448 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 111 213 - -
Seca10g01384 448 MobiDBLite consensus disorder prediction 23 49 - -
Seca10g01384 448 Gene3D Phosphorylase Kinase; domain 1 97 211 - -
Seca10g01384 448 SUPERFAMILY Protein kinase-like (PK-like) 117 403 IPR011009 -
Seca10g01384 448 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
Seca10g01384 448 PANTHER OS08G0249100 PROTEIN 12 412 IPR046958 -
Seca10g01384 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01384 Seca-Chr10 14269683 14274961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01384 109 417 Trihelix Transcription Factor Family AT5G38560 43.614 7.57e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca10g01384 Pkinase 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01384 - - gmx:100818314 736.873