Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01371 ATGTCGAAGGTCTCAGTTGGAGAAGAAAACAAAATAGTTGCTTCCTATGGGTGGGCAGCTAGAGACAACTCGGGAATTCTCTCCCCATTCCACTTTACCAGAAGAGCAAATGGTGATAACGATATCACCATCGACATACTCTATTCTGGGATTTGCCACTCGGACCTCCACATGGTGAAGAACGAGTTTGGATTGTCCATCTATCCAATGGTTCCTGGGCATGAGATTGTGGGTAAAGTGGTAAAGGTGGGTCGCAAAGTCACAAAATTCAGTGTTGGTGACATAGCTGGCGTGGGTGGCGTTGTGGGTTCGTGTGGCTCTTGTTCTGACTGCACCAAGGGCTTCTATGTATATTGTCCAAAAATGATTTTAACCTATAGTTCGCGTTACCATGATGGATCAATAACCCAAGGTGGATACTCCGATAAGCTAGTGGTTGACCACCATTTTGCGGTGCTAGTCCCAAATTCCCTGCCACTAGATGGTGCAGCCCCTTTGCTATGTGCTGGAATCACAGTATACAGCCCGATGAAATATTTTGGGCTTGCTCAGCCTGGAATACATTTGGGTGTTGTGGGCCTGGGAGGCCTGGGCCATGTTGCAGTCAAGTTTGCTAAGGCCTTTGGTATGCAGGTCACTGTGATAAGTACTTCTCTTAGCAAGAAAAATGAAGCATTGGAAAGGCTTGGTGCTGATGCATTCTTGGTTAGTCAAGACCAACAACAGTTGCAGGATGCTATGGGCACATTGGATGCCATTATTGACACAGTTTCAGCTCACCACTCCATCCAATCATTAATTGGCTTATTGAAAACAAGTGGAAAATTGATTTTGGTGGGTGCTCCAGCCTTGCCTCTTGAGGTATTAGCTATGCCTTTGCTTTTGGGGAGGAAGATGATTGCTGGTAGTGCAGGAGGAGGGATGGAAGAGATGCAAGAGATGATGGATTTTGCAGCAAGTCACAATATCACGGCAGATGTGGAGGTTATTCCAATGGAATATGTGAACACAGCCTTGGAGAGAGTTAAAAACAACGATGTTAAGTATCGCTTTGTCATTGATGTTGCCAATACAATAAACTGCATGTCCAATTAG 1095 0.453 MSKVSVGEENKIVASYGWAARDNSGILSPFHFTRRANGDNDITIDILYSGICHSDLHMVKNEFGLSIYPMVPGHEIVGKVVKVGRKVTKFSVGDIAGVGGVVGSCGSCSDCTKGFYVYCPKMILTYSSRYHDGSITQGGYSDKLVVDHHFAVLVPNSLPLDGAAPLLCAGITVYSPMKYFGLAQPGIHLGVVGLGGLGHVAVKFAKAFGMQVTVISTSLSKKNEALERLGADAFLVSQDQQQLQDAMGTLDAIIDTVSAHHSIQSLIGLLKTSGKLILVGAPALPLEVLAMPLLLGRKMIAGSAGGGMEEMQEMMDFAASHNITADVEVIPMEYVNTALERVKNNDVKYRFVIDVANTINCMSN. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01371 364 SUPERFAMILY GroES-like 22 186 IPR011032 -
Seca10g01371 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Seca10g01371 364 Pfam Alcohol dehydrogenase GroES-like domain 40 152 IPR013154 -
Seca10g01371 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 323 IPR036291 -
Seca10g01371 364 FunFam Cinnamyl alcohol dehydrogenase 169 325 - -
Seca10g01371 364 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Seca10g01371 364 CDD CAD1 17 354 IPR047109 GO:0016616
Seca10g01371 364 Gene3D - 169 325 - -
Seca10g01371 364 Gene3D - 18 355 - -
Seca10g01371 364 FunFam probable cinnamyl alcohol dehydrogenase 18 178 - -
Seca10g01371 364 PANTHER ALDEHYDE REDUCTASE 11 358 IPR047109 GO:0016616
Seca10g01371 364 SMART PKS_ER_names_mod 25 353 IPR020843 GO:0016491
Seca10g01371 364 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01371 Seca-Chr10 14065810 14068034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01371 15 364 Monolignol Biosynthesis Gene Families AT4G37990 63.714 1.27e-154 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01371 K23232 - gmx:100801089 573.163