Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01368 ATGTTAATTAAGAACGAAGTTGCTAGATACTTTATTTACCTTTGGTGCCTCAATGTTTTTATATATTTCAGGGAAACGGGTGAGAAAGATGTGGCATTCAAAGTGTTGTACTGTGGGATATGCCACTCAGATCTCCACATGCTCAAGAATGAATGGGGCGCTTCAACTTATCCACTAGTCCCTGGGCATGAAATTGTTGGTGTAGTGACAGAGGTGGGAAGCAAAGTACAAAAGTTCAAAGTTGGGGACAAAGTGGGTGTGGGATACATTGTTAATTCCTGCCGCTCATGCCAAAACTGTGATAACAGTCTTGAGAATTACTGTCCACGTAATACTCCCACATCTGGTGCCAAATATATTGATGGCACCACCACATACGGAGGCTACTCTGACTCAATGGTAGCAGATGAAAACTTTGTGGTTGGTATTCCTGATGGTTTACCTCTTGATGCTGCTGCACCTCTCCTCTGTGCTGGAATCACAGTGTATAGCCCTCTTAGATATTATGGACTTGACAAGCCAGGCCTGCATGTGGGTGTGGTTGGTCTCGGTGGATTAGGCCATATGGCTGTCAAGTTTGCCAAAGCTTTTGGTGCTAAGGTGACAGTTATCAGTACATCACCCAACAAACAGAAGGAAGCAATACAACACCTTGGAGCTGACTCATTTCTAATAAGCCGTGACAATGATCAGATGCAGGCTGCAATGGGCACTCTGGATGGAATTATTGACACAGTTTCTGCTAATCATCCTCTGTTACCTCTGCTGGGTTTACTGAAGTCTCATGGAAAGCTTGTAATGGTGGGTGCACCAGATAAGCCTATGGAGTTGCCGGTCTTTCCCTTACTTTTAGGGAGAAAGATAGTAGCTGGCAGTAGTGTCGGAGGGATGAAGGAGACACAAGAGATGGTTGACTTTGCAGCAGAACACAATGTAAAACCTGACATTGAGGTCGTTCCTATTGATTATGTCAACACAGCATTGGAGCGCCTCGTTAAAGCAGATGTCAAGGAAACGGGGGAGAAAGATGTTGCGTTTAAAGTGTTATACTGTGGAATATGCCACTCTGATCTCCACATGCTCAAGAATGAATGGGGCATGTCTATTTATCCACTTGTCCCTGGGCATGAGATTGTTGGCATAGTAACAGAGGTGGGAAGCAAGGTACAAAAGTTTAAAGTTGGGGACAGAGTGGGTGTGGGATGCATGGTTGATTCCTGCCGCTCATGCCAAAATTGTGCTGACAATCTTGAGAATTACTGCCCACGTTATACTCTCACATATAGTGCTAAATATGTTGATGGCACCACCACATACGGAGGCTACTCTGACTCAATGGTAGCAGATGAAAACTTTGTGGTTGGCATTCCTGATGGTTTACCTCTTGATGCTGCTGCACCTCTCCTCTGTGCTGGAATCACAGTATATAGCCCTCTTAGATATTTTGGACTTGACAAGCCTGGTTTGCATGTGGGTGTGGTTGGTCTCGGTGGATTAGGCCATATGGCTGTCAAATTTGCCAAAGCTTTTGGGGCTAATGTGACTGTTATCAGTACATCACCCAACAAACAGAAGGAAGCAATAGAACATCTAGGAGCTGATTCTTTTTTGATAAGCCGTGACAATGATCAGATGCAGGCTGCAATGGGTACTTTTGATGGTATTATTGACACGGTTTCTGCGGTTCATCCTCTGTTACCTTTGATTGGTTTATTGAAGTCTCATGGAAAGCTTGTAATGGTGGGCGCACCAGGGAAGCCTCTGGAGTTGCCGGTCTTTCCTTTACTTCTGGGGAGAAAGATAGTAGCTGGGAGTAGCATTGGGGGGATGAAGGAAACACAAGAGATGATTGACTTTGCAGCAGAACATAATGTAAAACCTGACATTGAAGTCATTCCAATTGATTATGTCAACACAGCATTGGAGCGTCTCCTTAAAGCGGATGTCAAATACCGATTTGTGATTGACATTGGAAACACACTGAAACCAAGCTCTTAG 1998 0.4444 MLIKNEVARYFIYLWCLNVFIYFRETGEKDVAFKVLYCGICHSDLHMLKNEWGASTYPLVPGHEIVGVVTEVGSKVQKFKVGDKVGVGYIVNSCRSCQNCDNSLENYCPRNTPTSGAKYIDGTTTYGGYSDSMVADENFVVGIPDGLPLDAAAPLLCAGITVYSPLRYYGLDKPGLHVGVVGLGGLGHMAVKFAKAFGAKVTVISTSPNKQKEAIQHLGADSFLISRDNDQMQAAMGTLDGIIDTVSANHPLLPLLGLLKSHGKLVMVGAPDKPMELPVFPLLLGRKIVAGSSVGGMKETQEMVDFAAEHNVKPDIEVVPIDYVNTALERLVKADVKETGEKDVAFKVLYCGICHSDLHMLKNEWGMSIYPLVPGHEIVGIVTEVGSKVQKFKVGDRVGVGCMVDSCRSCQNCADNLENYCPRYTLTYSAKYVDGTTTYGGYSDSMVADENFVVGIPDGLPLDAAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKQKEAIEHLGADSFLISRDNDQMQAAMGTFDGIIDTVSAVHPLLPLIGLLKSHGKLVMVGAPGKPLELPVFPLLLGRKIVAGSSIGGMKETQEMIDFAAEHNVKPDIEVIPIDYVNTALERLLKADVKYRFVIDIGNTLKPSS. 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01368 665 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 375 389 IPR002328 GO:0008270|GO:0016491
Seca10g01368 665 FunFam Cinnamyl alcohol dehydrogenase 158 314 - -
Seca10g01368 665 SUPERFAMILY GroES-like 24 175 IPR011032 -
Seca10g01368 665 PANTHER ALDEHYDE REDUCTASE 338 660 IPR047109 GO:0016616
Seca10g01368 665 Pfam Zinc-binding dehydrogenase 498 621 IPR013149 -
Seca10g01368 665 Pfam Zinc-binding dehydrogenase 185 308 IPR013149 -
Seca10g01368 665 Pfam Alcohol dehydrogenase GroES-like domain 342 454 IPR013154 -
Seca10g01368 665 Pfam Alcohol dehydrogenase GroES-like domain 29 141 IPR013154 -
Seca10g01368 665 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 460 626 IPR036291 -
Seca10g01368 665 Gene3D - 337 657 - -
Seca10g01368 665 FunFam Uncharacterized protein 14 157 - -
Seca10g01368 665 Gene3D - 471 627 - -
Seca10g01368 665 Gene3D - 158 314 - -
Seca10g01368 665 FunFam Cinnamyl alcohol dehydrogenase 471 627 - -
Seca10g01368 665 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 62 76 IPR002328 GO:0008270|GO:0016491
Seca10g01368 665 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 147 313 IPR036291 -
Seca10g01368 665 Gene3D - 23 336 - -
Seca10g01368 665 FunFam Putative cinnamyl alcohol dehydrogenase 6 628 657 - -
Seca10g01368 665 FunFam Uncharacterized protein 325 470 - -
Seca10g01368 665 SMART PKS_ER_names_mod 326 655 IPR020843 GO:0016491
Seca10g01368 665 CDD CAD1 335 656 IPR047109 GO:0016616
Seca10g01368 665 SUPERFAMILY GroES-like 330 488 IPR011032 -
Seca10g01368 665 CDD CAD1 24 337 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01368 Seca-Chr10 14050220 14058120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01368 337 664 Monolignol Biosynthesis Gene Families AT4G37990 72.561 6.85e-159 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01368 K23232 - tpra:123922700 995.342