Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01365 ATGTTGTGCAGAATCCACGGGACAAATTTCTCAGTCATAACTGCCAACGAGAATATAGTGGAAGTTTCATTTTTATCAACATGGACACCAGGCTCAAGTGTCCCCCCCATAAACATAGACAAAAGGTATATATTGAGAAGGGGCGATTCCGGGTTTTATTCTTACGTAATATTTGACCGACCAGAAGGATTCCCTGCAATGACGGTTTATCAAATTAGGATTGTTTTCAAGCTCAGCGACAAAAGGTTCCACTATATGGCTATATCAGATACTAGGCAAAGGAGCATGCCAACGGCGATTGATAGAAAAACAGGTAAAGTCCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATCCATCCAACTCAAAATTTAGGGGAGAGGTGGATGACAAATACCAATACTCCATTGAGAACGCAGACAACACTGTTAATGGCTGGATTACCACAGATAATTCTAAAGAGCACGTGGGTTTCTGGATCATAACACCCAGTAATGAGTTCCGCAATGGTGGGCCCATTAAGCAAGACCTTACCTCTCATGTTGGCCCTGTTGCCCTCTCTATGTTTGCCAGCACTCATTATGCTGGGAAGGAGCTAAGCATAACATTTGAAGAAGGGGAGGCATATAAAAAGGTTTTCGGCCCTGTTTTTATATACCTAAACTCTGCATCATATAAAGTTAATTTCCGATCTCTATGGTCTGATGCTGTACAACAGCTATCCAAAGAAGTTAAAAGCTGGCCTTATGATTTCCCCAAATCAAAAGATTTCCTTCCATCCAATCAACGAGGAGCAGTAGCAGGGCGTTTAAAAGTCCAAGAGCGGTATATCAGGGGAGAGAGTTCTAAATATGTTAAAAATGCTTACATTGGGCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTCTGGACTCGAACAGATGAAAATGGATATTTTATGATTAAAAATGCTGTACCTGGGAAATACAACTTGTATGCATGGGTTCCTGGCTATATTGGAGATTACAAATATAATGCTACATTCACCATCACACCAGGACGGTCCATCAACATGGGCTCACTTGTATATAGTCCTCCAAGAAATGGTCCAACTCTTTGGGAAATTGGCATCGCAGATCGCTCAGCTGCAGAATTCCATGTGCCAGACCCTTGCCCTAAACTCTTGAACTACTTATACAAGAACGATCAAAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATACTGACTTATATCCAAACAATGATCTCGTTTACACAATTGGTGTTAACAACTATGAAAAGGATTGGTTTTTCGCTCATGTTACCAGGAACATAGGAAATAATACATACCAGCCAACCACATGGAAGATTGTATTTGAACTTGAAAATAACACATTGAAAGGAAATTACACACTACAACTGGCCCTGGCATCAGCCCATTATTCTGAAGTGCAGGTTTGGTTCAATGATCCAAGTGGTAATTCTCCTCATTTCACAACAAAGCTAATTGGTGGAGACAATGTGATAGCAAGGCACGGCATCCATGGATTACATAGATTGTATAGCATAGATGTAGGTAGTGATCTTTTGGTAGAAGGAAATAACACCCTCTATTTGAGGCAGTCAAGAGCCGCAGGTCCTTTCCAAGGGGTGATTGAGAACGGCATCGTTTCCGTCAATTTGTCAAAACCCGAGGGCTATATCCTTGGAATATCATACAAAGGAATTGACAATGTACTTGAAACTCAAAATGCAGAAAACGATAGAGGGTACATGGACGTTGTTTGGAACGAACCCGGACAAGCCAGCATCTTTCAGAGAATCCACGGAACAAGTTTCTCAGTCATAACAGCGGAAGAGAATATAATGGAGGTTTCATTTTTATTAACATGGACATCTTCTATGAGAGCCTCAAGTGTACCCATAAACATAGACCAAAGGTATATATTGCGAAGTGGCGATTCCGGGTTTTATTCTTATGTAATATTTGAGCGACCACAAGGATTATCTGCGGTGGAGGTTGATCAAATTAGGACTGTTTTTAAGCTTAACGAAGAGAGGTTCCACTACATGGCTATATCAGATACTAGGCAAAGGAACATGCCAGCGATGAGTGATAGAGAAAAGGGTCAACCCCTGGCATATCCTGAAGCTGTTCACTTAACCCATCCATCTAACCCACAATTTAGAGGAGAGGTGGATGACAAGTACCAATACTCAATTGAGAACACAGACAACAATGTTAATGGCTGGATTGCCACAGATTCTAGACCAACTATAGGTTTTTGGATCTTAACACCTAGTAATGAGTTCCGCAACTGTGGGCCCATCAAGCAAGACCTTACCTCTCATGTTGGCCCAATTGCTCTCTCCATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTCACCATGTCATTTCAAGAAGGAGAGACTTATAAAAAGGTTTTTGGCCCGGTTTTTGTCTACCTTAATTCTGCATCAAGTGATGTCCATTTCCAATCTCTATGGTCAGATGCTGTGCAACAGCTATCCAAAGAAATCAAAAGCTGGCCTTATGATTTCCCCAAATCAAAATATTTCTTTCCATTCAATCAACGAGGAATAGTAGCAGGACATTTACAAGTCCAAGAGCGGTATATATGGGGAGAGAGTTCTAAATATGCTAAAAATGCTTATGTTGGGCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAAGGAAAGCAAGGGTTATCAATTCTGGACTCGAACTGATGGAAATGGATATTTTGTGATAAAAAATGTTGTACCTGGGAAATACAACTTGTATGCATGGGTTCCTGGCTATATTGGAGATTACAAATATAATGCTATAATCACCATAACACCAGGAGGCTCTATCAATTTTGGTTCACTTGTATATAGTCCTCCAAGATATGGTCCAACTCTTTGGGAAATTGGCATCCCAGATCGCTCAGCTGCAGAATTCTATGTACCAGACCCTTACCCTACACTCATGAACAAGTTATACAACAACGATAACAAAAACAAGTTTAGGCAATATGGGTTGTGGGAACGTTATGCTGATATGTATCCAAATCATGATCTCATTTACACGGTTGGTGTTGACAACTATAAAAAGGATTGGTTTTTCGCTCATGTGACCAGGAGCACAGGACATAATACATTCCAACCAACCACATGGAAGATTATATTTAAACTTCAAAATAGCATTTTGAGAGGAAACTACACACTGCAACTGGCTCTGGCATCCGCCTCTAAATCGGAACTGCAGGTTTGGTTCAATGGACAGAGTGCTAATCGTCCCCAGTTCACAACAGGGGTAATAGGCGGAGATAGTGTGATAGCAAGGCATGGCATCCATGGATTGCATAGGCTGTATAGCATAGATGTAGGTAGTGATCATTTGGTGAAAGGAATGAACACCATCTATCTGAGGCAGTCAAGAGCACAAGATCCTTTCCAAGGAGTTATGTATGATTATATTAGCTTAGAAAGTCCTCCAACTCCAATTACTTGA 3531 0.4132 MLCRIHGTNFSVITANENIVEVSFLSTWTPGSSVPPINIDKRYILRRGDSGFYSYVIFDRPEGFPAMTVYQIRIVFKLSDKRFHYMAISDTRQRSMPTAIDRKTGKVLAYPEAVLLTHPSNSKFRGEVDDKYQYSIENADNTVNGWITTDNSKEHVGFWIITPSNEFRNGGPIKQDLTSHVGPVALSMFASTHYAGKELSITFEEGEAYKKVFGPVFIYLNSASYKVNFRSLWSDAVQQLSKEVKSWPYDFPKSKDFLPSNQRGAVAGRLKVQERYIRGESSKYVKNAYIGLALPGDAGSWQTESKGYQFWTRTDENGYFMIKNAVPGKYNLYAWVPGYIGDYKYNATFTITPGRSINMGSLVYSPPRNGPTLWEIGIADRSAAEFHVPDPCPKLLNYLYKNDQRDKFRQYGLWERYTDLYPNNDLVYTIGVNNYEKDWFFAHVTRNIGNNTYQPTTWKIVFELENNTLKGNYTLQLALASAHYSEVQVWFNDPSGNSPHFTTKLIGGDNVIARHGIHGLHRLYSIDVGSDLLVEGNNTLYLRQSRAAGPFQGVIENGIVSVNLSKPEGYILGISYKGIDNVLETQNAENDRGYMDVVWNEPGQASIFQRIHGTSFSVITAEENIMEVSFLLTWTSSMRASSVPINIDQRYILRSGDSGFYSYVIFERPQGLSAVEVDQIRTVFKLNEERFHYMAISDTRQRNMPAMSDREKGQPLAYPEAVHLTHPSNPQFRGEVDDKYQYSIENTDNNVNGWIATDSRPTIGFWILTPSNEFRNCGPIKQDLTSHVGPIALSMFVSTHYAGKEVTMSFQEGETYKKVFGPVFVYLNSASSDVHFQSLWSDAVQQLSKEIKSWPYDFPKSKYFFPFNQRGIVAGHLQVQERYIWGESSKYAKNAYVGLALPGDAGSWQKESKGYQFWTRTDGNGYFVIKNVVPGKYNLYAWVPGYIGDYKYNAIITITPGGSINFGSLVYSPPRYGPTLWEIGIPDRSAAEFYVPDPYPTLMNKLYNNDNKNKFRQYGLWERYADMYPNHDLIYTVGVDNYKKDWFFAHVTRSTGHNTFQPTTWKIIFKLQNSILRGNYTLQLALASASKSELQVWFNGQSANRPQFTTGVIGGDSVIARHGIHGLHRLYSIDVGSDHLVKGMNTIYLRQSRAQDPFQGVMYDYISLESPPTPIT. 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01365 1176 CDD RGL4_C 374 555 - -
Seca10g01365 1176 Pfam Rhamnogalacturonate lyase family 4 128 IPR010325 -
Seca10g01365 1176 Pfam Rhamnogalacturonate lyase family 545 736 IPR010325 -
Seca10g01365 1176 CDD RGL4_N 10 224 - -
Seca10g01365 1176 Pfam Polysaccharide lyase family 4, domain III 372 555 IPR029411 -
Seca10g01365 1176 Pfam Polysaccharide lyase family 4, domain III 979 1168 IPR029411 -
Seca10g01365 1176 Pfam Polysaccharide lyase family 4, domain II 893 964 IPR029413 -
Seca10g01365 1176 Pfam Polysaccharide lyase family 4, domain II 286 358 IPR029413 -
Seca10g01365 1176 SUPERFAMILY Starch-binding domain-like 913 966 IPR013784 GO:0030246
Seca10g01365 1176 CDD RGL4_N 554 833 - -
Seca10g01365 1176 Gene3D - 977 1169 - -
Seca10g01365 1176 Gene3D - 370 549 - -
Seca10g01365 1176 SUPERFAMILY Galactose-binding domain-like 369 555 IPR008979 -
Seca10g01365 1176 SUPERFAMILY Galactose mutarotase-like 559 831 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca10g01365 1176 CDD RGL4_C 981 1169 - -
Seca10g01365 1176 FunFam Rhamnogalacturonate lyase B 259 359 - -
Seca10g01365 1176 Gene3D - 868 966 - -
Seca10g01365 1176 Gene3D - 258 360 - -
Seca10g01365 1176 SUPERFAMILY Galactose-binding domain-like 977 1169 IPR008979 -
Seca10g01365 1176 CDD RGL4_M 262 362 IPR029413 -
Seca10g01365 1176 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 554 1172 - -
Seca10g01365 1176 FunFam Rhamnogalacturonate lyase B 866 966 - -
Seca10g01365 1176 Gene3D - 550 845 IPR014718 GO:0030246
Seca10g01365 1176 Gene3D - 5 226 IPR014718 GO:0030246
Seca10g01365 1176 CDD RGL4_M 869 969 IPR029413 -
Seca10g01365 1176 SUPERFAMILY Starch-binding domain-like 261 359 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01365 Seca-Chr10 13988320 14004103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01365 7 555 Polysaccharide Lyase AT4G37950 54.775 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01365 K18195 - gmx:100776664 950.658