Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01363 ATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAATTCTACGAGCAGGCAAGTGACTTTCTCAAAAAGGAGAAAGGGATTGATCAAGAAAGCGAAAGAGCTCGCAATCCTCTGTGATGCACAAGTTGGACTTGTCATCTTCTCCAGCACGGGAAAGCTTTATGAATATGCAAGCAACAGGTTTGTTTCAGTTTCTTCACCTTTCATTTTTCCAATATTTATTTATTTATGTGTTTGTTAA 243 0.3909 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYASNRFVSVSSPFIFPIFIYLCVC. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01363 80 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca10g01363 80 CDD MADS_MEF2_like 2 65 IPR033896 GO:0000977|GO:0045944
Seca10g01363 80 Gene3D - 13 70 IPR036879 GO:0003677|GO:0046983
Seca10g01363 80 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca10g01363 80 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca10g01363 80 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca10g01363 80 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Seca10g01363 80 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca10g01363 80 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca10g01363 80 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca10g01363 80 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01363 Seca-Chr10 13930710 13930952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01363 1 65 MADS-box Gene Family AT4G37940 84.615 2.39e-34 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca10g01363 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01363 K09264 - eus:EUTSA_v10022995mg 118.627