Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01349 ATGGAGCTTTCTCAACTTGGTTTTCTGGAGGAACTACTTGCTCCAAGAAAAGACACTTGGAATGCTTTGTCCACTGGGTTGAATGAGTTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGAAGAGAACCCAGCTTTGGCTACTTTAAATCCCTCATTTGCTGCATTTTCAACCCCAATAGACCATAGATTTGAATGTCCTTATGGCAGTGAAGCAGCATACCCTTATGTTGATGGGTTCACAATGCCAGAGCTTGATTCATCATACACCAGAAATGATGAGTCAGCTCCAGTTTTACCACAAGAAGATAACCCATCAGTGGAGGATATTGATGAAGAGTTTGGCTTTCTGGGCAGTGATAAGCAGTGTTTGGAACAAATTAAAAATAGCTGCAAAATTGAGGAACAAGTTACAGAGATTCCAGTCTTCAACATGGGCTTATGTGGAGATAAAAAGCCCAAATCCAAAAGGTTAGAAGGACAGCCTTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGCCTCAATGACCGGCTTTCCATGCTAAGGTCAATAGTCCCTAAGATCAGCAAGATGGATAGGACATCCATTCTTGGAGATACCATTGATTACATGAAAGAGCTTCTAGAAAGGATTGGGAAGTTGCAAGAAGAAATGGAGGAGGGGACTAATCAGATAAATCTCATGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAGGACATGAGGATCAGCATCTGCTGTGCCACAAAGCCAGGATTATTACTGTCAACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAGTGATTTTTCATTGCAAGCATCTTGCTCAGAGGCAGATGGGCAGAGAAATTGTATGAGCGCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 999 0.4234 MELSQLGFLEELLAPRKDTWNALSTGLNELLPSGWSFDSFEENPALATLNPSFAAFSTPIDHRFECPYGSEAAYPYVDGFTMPELDSSYTRNDESAPVLPQEDNPSVEDIDEEFGFLGSDKQCLEQIKNSCKIEEQVTEIPVFNMGLCGDKKPKSKRLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMEEGTNQINLMGISKELKPNEVMVRNSPKFDVERRDQDMRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFSDFSLQASCSEADGQRNCMSAEEIKQALFRNAGYGGRCL. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01349 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Seca10g01349 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 326 - -
Seca10g01349 332 Coils Coil 206 226 - -
Seca10g01349 332 Gene3D - 152 226 IPR036638 GO:0046983
Seca10g01349 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 228 IPR036638 GO:0046983
Seca10g01349 332 CDD ACT_UUR-ACR-like 260 321 - -
Seca10g01349 332 SMART finulus 166 215 IPR011598 GO:0046983
Seca10g01349 332 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01349 Seca-Chr10 13756998 13759540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01349 150 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.306 1.33e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g01349 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01349 - - gmx:100806571 588.186