Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01343 ATGTCTCCGCCAGCGGTGGTTACGGATGAGGAAGGGGTAACATCTGCTTCTTCACAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGGAATTACCTAGGATTGTCTGATTGTTCATCAGTGGACAGTTGTGCTTCTACTGTCCCAAGCTTGACTGATGAGAAAAAGGGGAACCTGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTCCCTGGATCCCAATCACCCGAAAGGGATCCGGATCTTTACTCTTTAAGCTCAACAAAGCTTGATGAGAAGCCACTTTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCCTCATCGCAGAAAACTGTGGTTTCGGGCAACAAGAGAGGTTTTGCTGATACCATCGATGGGTTTCCTCAGGGAAAGTTTACTGGTAATACAGGCATAAATGTAATGCTCTCACCTAGAGCTTCTGGAGCTCAGCCCACCGCAATTAAAGAAATGCCAAGCAAGGTGTTGCAAGAACGGCCTTGTGCAGCTAAAGGAACTGGTCATAACCATACAAGTGCTTCTATTAGTGGCAGTGCCCCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACCACTTCCAAGAACAATGATGAAGTTGATGGAAAACCAGGTCCTGCTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGCCAGTGTGGAGGTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGGGACCTTCTGCATGGTTCAGAATACGTTCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCATTGACACTTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCCGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1041 0.4649 MSPPAVVTDEEGVTSASSQSLDRFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLTDEKKGNLNLKATELRLGLPGSQSPERDPDLYSLSSTKLDEKPLFPLLPTKDGICSSSQKTVVSGNKRGFADTIDGFPQGKFTGNTGINVMLSPRASGAQPTAIKEMPSKVLQERPCAAKGTGHNHTSASISGSAPASKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGGPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01343 346 Gene3D - 226 340 - -
Seca10g01343 346 ProSiteProfiles PB1 domain profile. 229 330 IPR000270 GO:0005515
Seca10g01343 346 MobiDBLite consensus disorder prediction 11 25 - -
Seca10g01343 346 Pfam AUX/IAA family 68 337 IPR033389 -
Seca10g01343 346 MobiDBLite consensus disorder prediction 178 192 - -
Seca10g01343 346 SUPERFAMILY CAD & PB1 domains 227 327 - -
Seca10g01343 346 FunFam Auxin-responsive protein 224 338 - -
Seca10g01343 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 333 IPR003311 GO:0005634|GO:0006355
Seca10g01343 346 MobiDBLite consensus disorder prediction 1 25 - -
Seca10g01343 346 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01343 Seca-Chr10 13688531 13693249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01343 231 331 B3 DNA Binding Superfamily AT5G37020 33.663 2.23e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca10g01343 AUX_IAA 6.6e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01343 K14484 - gmx:547502 609.757