Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01329 ATGAATCTGTGGACTGAGGACAATTCATCTTCAGTAATGGACGCCTTCATGACGTCCTCCGATTTATCCTCAGTGTGGCCACTGGCACCGCCTCAGCCGCAGCAGCCACCCACCGGTGTCTTCAACCAGGACACCCTCCAGCAGCGTCTACAAGCTCTCATCGAAGGAGCCAGAGAGACCTGGACCTACGCAATATTTTGGCAACCCTCATATGACTATTCCGGCAACTCCTCCCTCCTCGGCTGGGGCGACGGTTACTACAAGGGCGAAGAAGATAAAGCCAAGGCCAAAGCCAGAGCTAAATCCACCTCCGCCGCCGAACAAGACCACCGTAAAAAGGTCCTCCGTGAACTCAATTCTCTCATCTCCGGTTCCTCCGCCCCTACCTCTGATGATGCCGTCGACGAAGAAGTAACCGACACCGAGTGGTTCTTTCTAGTCTCCATGACTCAATCTTTCGTAAACGGCGGCGGGTTACCAGGTCAGGCCTATTTCAATTCAACTCCTATTTGGATTACCGGCGCGGAACGCCTCTCCGCTTCTTCCTGTGAGAGAGCCAGACAGGGACAAATCTTTGGTCTCCAGACCTTGGTTTGTGTACCGTCTGCGAGTGGCGTGGTGGAGCTGGGGTCCACTGAGCTGTTATACCAGAATCCAGATCTGATGAATAAGGTGAGGGTTTTGTTCAATTTTAGCAACAATCTGGATTTGAGTTCTTCTTGGCCTGATCAAGGAGAAAACGATCCTTCTTCTCTCTGGCTCAACAATGATGCTGAGGCTAGAGATTCCGTCAACACTGTTGTCACCACCACCGCTTCCGTCACAGTTCCCAACAACCAAGGGATTTCAAAGACGTTGCACTTTGACACGCCGGGTTCCAGTTCCTTAACAGAAACCCCAAGCGCCGTTCACATCCCCAACCACAGCCAGCCGTCACAGAATCAGAGCTTCTTCTCTGGGGAACTGAACATGTCTCAGTATGGGTTCGATGCCAAGAACGGGAGCAGCCACCAGCACCATTCTCTGAAGCCGGAATCTGGTGAAATTCTGAGTTTCGGCGGCGAGAGCAAGAGGAGCTCCTATGGTGGAAATGGAAATTCCCATTTCTTCTCCGGCCAGTCTCAGTTTGTTCCCTCCGCTGAGGAGAACAACAACGGTAAGAGGAAGTCGCCGAATTCAAGGGGCAGTAACGATGATGGAATGCTTTCCTTCACCTCCGGTGTGATTCTTCCGGCGGCGAATTTGAAGTCCACTGGTGGTGGAGGCGATTCGGACCATTCGGATCTGGAAGCGTCGGTGGTGAAGGAGGCTGATAGCAGCAGGGTGGTGGAGCCGGAGAAGCGACCCCGGAAGAGAGGGCGGAAGCCGGCGAATGGTAGAGAGGAACCTTTGAACCACGTTGAAGCGGAGAGGCAGAGGAGAGAGAAGCTGAACCAGAGATTCTACGCGCTTCGTGCTGTTGTTCCCAACGTGTCAAAGATGGACAAAGCTTCGCTTCTGGGAGACGCCATATCTTACATTAATGAGCTGAAAGCCAAGCTTCATAACCTGGAATCGGATAAAGATGGATTGGAGAAGCAACTTGATTCAATGAAGAAAGAACTTGAGAAATCCACTGAACTCTCTTCTGCTCCTCCTCCTCCACCACCTAATACTAATAAGTCCTCTTCCAGTAACGCTTTAATCGATTTGGATATTGACGTGAAGATCATAGGTTGGGATGCAATGATAAGGATCCAATGTAGCAAGAAGAACCACCCTGCAGCAAGGTTGATGGCGGCGTTGATGGAGCTGGACTTGGACGTGCACCACGCCAGCGTCTCAGTGGTGAATGATTTGATGATTCAACAAGCTACCGTGAAGATGGGAAGTCGCTTTTACACACAGGAACAGCTACGATCAGCACTTTCTTCCAAAGTTGGGGATGGCCCATGA 1935 0.5142 MNLWTEDNSSSVMDAFMTSSDLSSVWPLAPPQPQQPPTGVFNQDTLQQRLQALIEGARETWTYAIFWQPSYDYSGNSSLLGWGDGYYKGEEDKAKAKARAKSTSAAEQDHRKKVLRELNSLISGSSAPTSDDAVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAYFNSTPIWITGAERLSASSCERARQGQIFGLQTLVCVPSASGVVELGSTELLYQNPDLMNKVRVLFNFSNNLDLSSSWPDQGENDPSSLWLNNDAEARDSVNTVVTTTASVTVPNNQGISKTLHFDTPGSSSLTETPSAVHIPNHSQPSQNQSFFSGELNMSQYGFDAKNGSSHQHHSLKPESGEILSFGGESKRSSYGGNGNSHFFSGQSQFVPSAEENNNGKRKSPNSRGSNDDGMLSFTSGVILPAANLKSTGGGGDSDHSDLEASVVKEADSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKAKLHNLESDKDGLEKQLDSMKKELEKSTELSSAPPPPPPNTNKSSSSNALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSSKVGDGP. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01329 644 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 46 229 IPR025610 -
Seca10g01329 644 SMART finulus 467 516 IPR011598 GO:0046983
Seca10g01329 644 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 530 IPR036638 GO:0046983
Seca10g01329 644 MobiDBLite consensus disorder prediction 532 558 - -
Seca10g01329 644 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Seca10g01329 644 FunFam Transcription factor bHLH13 454 528 - -
Seca10g01329 644 Gene3D - 453 541 IPR036638 GO:0046983
Seca10g01329 644 MobiDBLite consensus disorder prediction 357 403 - -
Seca10g01329 644 Pfam Helix-loop-helix DNA-binding domain 465 510 IPR011598 GO:0046983
Seca10g01329 644 PANTHER MYC 22 639 IPR045084 GO:0003700|GO:0006355
Seca10g01329 644 MobiDBLite consensus disorder prediction 428 471 - -
Seca10g01329 644 CDD bHLH_AtAIB_like 458 534 - -
Seca10g01329 644 MobiDBLite consensus disorder prediction 281 335 - -
Seca10g01329 644 Coils Coil 507 541 - -
Seca10g01329 644 MobiDBLite consensus disorder prediction 281 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01329 Seca-Chr10 13464637 13466571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01329 1 641 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.456 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g01329 bHLH-MYC_N 9.1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01329 K13422 - gmx:100790168 884.404