Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01316 ATGGCAACTTTAGAATTAGCTGTTACTGTGTTCGCACCTCAACGTTTTTCTAATAGCTATCGCTTCCCAGCAAAATCACCCGACTCCTTAAAGCTCCATGCTTCCACCTCTTTCTCTTCCCTTCCTCACACTCACAACCTTCTCTTCTCTTCCAATGTCTCCTGCAAAACCCGTAGACTCTGCTTCGAGTTATGCTCTGCTTTGCAAGAGGTAGCTGCAGAAACCGTAGAGGAATTCCAGCCAATAAACAACGTCAAGAAGAAGCTCTACGTGTTCAACTTACCTTGGTCTCTGTCAACGGAAGATATCAAGGACCTCTTTGGACAATGCGGAACTGTAACAGACGTCGAGATAATAAAGAACAAGTATGGGAAGGGCAAAGGCTATGCCTTCATCACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTGTTGATAAATTTGACTCTCATATAATTACTAAAGGCTTGGGGTTGGAGTTTGCACTATCATTTCTTCAATACCTTTCTGCCCTCACATACAGTAGTCTACCAGCAGTTTACAACAAAAATTGTCATCTTTACCTAAAATGGAAGTTTTGTGACGTGGCAGTCGTAGTAGGATTTCCTTATAAATAA 615 0.4309 MATLELAVTVFAPQRFSNSYRFPAKSPDSLKLHASTSFSSLPHTHNLLFSSNVSCKTRRLCFELCSALQEVAAETVEEFQPINNVKKKLYVFNLPWSLSTEDIKDLFGQCGTVTDVEIIKNKYGKGKGYAFITMASGEEAQAAVDKFDSHIITKGLGLEFALSFLQYLSALTYSSLPAVYNKNCHLYLKWKFCDVAVVVGFPYK. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01316 204 PANTHER OS02G0815200 PROTEIN 30 150 - -
Seca10g01316 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 152 IPR000504 GO:0003723
Seca10g01316 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Seca10g01316 204 SUPERFAMILY RNA-binding domain, RBD 81 152 IPR035979 GO:0003676
Seca10g01316 204 SMART rrm1_1 88 161 IPR000504 GO:0003723
Seca10g01316 204 CDD RRM_SF 89 152 - -
Seca10g01316 204 Gene3D - 52 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01316 Seca-Chr10 13194661 13198397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01316 74 152 Eukaryotic Initiation Factors Gene Family AT4G34110 35.443 1.44e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01316 - - gmx:100793319 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01316 10 13194661 13198397 Seca10g01316 10 13194661 13198397 ECH