Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01315 ATGGCATCTCTAGGAAATCCAAAAGCTTGGGTTCCATACATGAACAACAAGGACTGTACTCAAGGATTTTGCAGCTTCTATTGTCCACAGTGGTGTTATGTAATCTATCCTCCTCCTCCTCCTTCTCCCTTTGAATTTCCTGATGATGATTCAAGTCCAAATTTCTCCCCTCTTGTTATTGCAGTCATTGGAATCTTGGCCAGTGCTTTTCTTCTTGTGAGTTATTATACCATAATATCCAAGTACTGTGGCCGAAGAGAACCTTCACAAGGTGAAAACCATGAAGGAAACACTGAATTGGAAGAGAATCACAACCCTTCACTCCATGAACCATGGCATGTTTCAACCACTGGCTTAGATGAGGCTTTGATTAAGTCCATAACAGTTTGCAAGTACAAGAAAGATGGTTTGGTTGATGTAGCAGATTGCTCAGTTTGTCTCAGTGAGTTTCAAGATAATGAAAGTATTAGACTCTTGCCAAAGTGCAGCCATGCTTTTCATCTCCCTTGCATTGACACATGGCTCAAATCTCACTCCAATTGCCCTCTATGTCGTTCTAGCATATTCACCTTCAATGCTGCAACACATTATGTTCCAGCCCCAGCTATAGAACTCCCTTCAAGGAATGATACTTCCTCAGAAAATCAACATGCAGATGAAAATGTTGCTGCTGGAAGAGACAGTGAATTGGATGCAGTGGAAGAAGAAAACTTGCATGGTAGAGCAGTTCCAAAGACTGCATTGCGTGCTTTCAGTGATTTAGGCAATTTGAGGGGAAGGAATAGTATAATTGAGATTAGAGATGAAGACTATGAATCCATAAGAAGGTCAGTTTCTATGGATCATTCTTTTCAAGGTTGTCTTTCTGTTGCTGATGTTCTGCATATGAATCAAGAGCAAGATTCCCAAGTAGAAGGATGCTCCAATGGAGCTGGTTCATCAAAGAGATCAAGAGGTGAAAGTAGCAAGTTTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCCAGTGGAAGATTCTCTCTTAGCAGAAATGGCAGAGGAAGGCAGGGGATTTTGCCTGTCTGA 1095 0.411 MASLGNPKAWVPYMNNKDCTQGFCSFYCPQWCYVIYPPPPPSPFEFPDDDSSPNFSPLVIAVIGILASAFLLVSYYTIISKYCGRREPSQGENHEGNTELEENHNPSLHEPWHVSTTGLDEALIKSITVCKYKKDGLVDVADCSVCLSEFQDNESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRSSIFTFNAATHYVPAPAIELPSRNDTSSENQHADENVAAGRDSELDAVEEENLHGRAVPKTALRAFSDLGNLRGRNSIIEIRDEDYESIRRSVSMDHSFQGCLSVADVLHMNQEQDSQVEGCSNGAGSSKRSRGESSKFSYRRRVLHCVLSPIAMKRSFSSGRFSLSRNGRGRQGILPV. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01315 364 CDD RING-H2_EL5-like 142 185 - -
Seca10g01315 364 Pfam Ring finger domain 142 185 IPR001841 -
Seca10g01315 364 MobiDBLite consensus disorder prediction 301 321 - -
Seca10g01315 364 MobiDBLite consensus disorder prediction 87 107 - -
Seca10g01315 364 FunFam RING-H2 finger protein ATL54 119 191 - -
Seca10g01315 364 PANTHER RING-H2 FINGER PROTEIN ATL16 43 328 IPR044600 GO:0016567|GO:0016740
Seca10g01315 364 SUPERFAMILY RING/U-box 127 191 - -
Seca10g01315 364 MobiDBLite consensus disorder prediction 205 226 - -
Seca10g01315 364 SMART ring_2 143 184 IPR001841 -
Seca10g01315 364 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Seca10g01315 364 MobiDBLite consensus disorder prediction 301 319 - -
Seca10g01315 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 189 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01315 Seca-Chr10 13190190 13191284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01315 1 315 C3H Transcription Factor Family AT3G03550 43.452 6.51e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01315 - - gmx:100792267 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01315 10 13190190 13191284 Seca10g01315 10 13190190 13191284 ECH
Seca10g01315 10 13190190 13191284 Seca10g01315 10 13190190 13191284 PCT