Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01314 ATGGCTTTAGAAACACTGTCATCTAATGAATTTTCTAGTTTCATTATCCATGACACTATCTCTGCAACTCCATTTAGCAGCCATGACTCTTCAGAGACTAGTTTACTATTAGAAGAAAATAGAGTGAAATGTCATGAACATGACCCTGCATTTGATAACTATGCTTTGGAGACACGAAAACGCCAAGCTGGTGAACCAGAAATCATTGGCCAGAGGCAGAATTTTGCTGTGCAAGGGAGGAAGAAGAGGAGAAGAAAGGCAAGGATTTGCAAAAACAAGGAAGAGGCTGAGACTCAAAGAATGACCCACATTACTGTGGAAAGAAACCGCAGGAGGCAGATGAATGAGCATCTTGCTGTTCTGCGTTCACTCATGCCTGAATCCTATGTACAAAGGGGTGACCAGGCCTCTATAGTGGGTGGCGCTATAGAATTTGTGAAGGAGCTGGAGCACCTCATGCAGTCCCTTGAGGCTCAAAAGTATCAGCTTTTACATCAAGGAGTAGCACAAGCCAGTGAAGATGCAGCTATTTCCAAATTCTTGAGACCCCCTTTTGCCAATTTTTTTATGTATCCTCAGTACACTTGGTCCCAGGCTCCTAACAAATACACATCTCAGACTAAGGCAGCCATAGCTGATATTGAGGTTACTTTGATCGAAACCCATGCAAACCTTCGAATCCTCTCGCGGAGAAGCCCCAGGCAGCTATCAAAGCTGGTTGCTGGTTTTCAAACACTCTACCTCACCATCTTACATCTCAATGTCACCACCATGGACCCCTTGGTACTCTATTCTATCAGTGCCAAGGTTGAAGAAGGATGCCAACTTGGTTCAGTAGATGACATTGCAACAGCAGTTCACCACTTGCTTAGAATGATTGATGAAGAAGCTTCCCTTTGCTGTTAA 906 0.4404 MALETLSSNEFSSFIIHDTISATPFSSHDSSETSLLLEENRVKCHEHDPAFDNYALETRKRQAGEPEIIGQRQNFAVQGRKKRRRKARICKNKEEAETQRMTHITVERNRRRQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLMQSLEAQKYQLLHQGVAQASEDAAISKFLRPPFANFFMYPQYTWSQAPNKYTSQTKAAIADIEVTLIETHANLRILSRRSPRQLSKLVAGFQTLYLTILHLNVTTMDPLVLYSISAKVEEGCQLGSVDDIATAVHHLLRMIDEEASLCC. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01314 301 SMART finulus 104 155 IPR011598 GO:0046983
Seca10g01314 301 PANTHER MAX DIMERIZATION, MAD 59 297 - -
Seca10g01314 301 CDD bHLH_AtFAMA_like 101 160 - -
Seca10g01314 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 167 IPR036638 GO:0046983
Seca10g01314 301 Gene3D - 90 166 IPR036638 GO:0046983
Seca10g01314 301 Coils Coil 146 166 - -
Seca10g01314 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Seca10g01314 301 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01314 Seca-Chr10 13182072 13184078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01314 90 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 57.143 1.29e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g01314 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01314 - - pvu:PHAVU_003G284500g 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01314 10 13182072 13184078 Seca10g01314 10 13182072 13184078 ECH