Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01312 ATGTCTCCTTCAAAAGTAGATAATTCAGAAACTCCATCGCAACCAGCAGCTACAACCTACAGCACCTCACCAGCGCTTGTAGCCTTCACACTCGCCGTGGTTGTGATTTGCTTTGTAGGTTTCAGCGTAGTTTACTTCTGCAGGTGTTATTTTGCAAGTTTCATGCACACTTGGGCATTTCAAAGAACAGCTTCAGGCACCATCGTTCGTCTTTCCAACAATAATCAATCTCCAAACAGAGGCCTCGATTCTTCTCTGCTCCAATCCTTCCCTTCCTTTCTCTATTCCTCCGTCAAGAATCTCCGTAAGGAGAAAAACTATAGCCTCGAATGCGCCATTTGTTTGTTGGAGTTTGAGGAAGATAGCATGCTTCGCCTTCTAACCGTTTGCTACCATGTCTTCCATCAAGAATGCATTGACCTCTGGCTCAGTTCACACAAGACTTGCCCTGTTTGTCGTAAGGATCTTGAATATTCACCAACAAACGAAACGCGAAAGTCTCAGGAGGTTGCAGAGGATAATCTCCGTGTAGTAGAAGAGAGCAGGGATCATGTGTGCATTGAGGTAAAAGAAGAAGAAGGTGAAGGTGAAGATCAGAGACATGATGATGTGGCTGCTGTAGTTTCGATGAAGGAACAGGGAGAACAGAGATTTGCACGGTCACACTCAACGGGACATTCTATAGTTATGATTAGAGGAGGAGATGAAGGAAAGGATGATGAAAAATATACGTTGAGATTACCAGAACATGTAGCGTTAAAATTTGTAAGAGGAGGGCATAACTGCACAAAGAGTTGTTCAAGTTATAAGGATATGGTTGCGGCAAGGCCTGCTGGTACATGCATCTGTTAG 852 0.4401 MSPSKVDNSETPSQPAATTYSTSPALVAFTLAVVVICFVGFSVVYFCRCYFASFMHTWAFQRTASGTIVRLSNNNQSPNRGLDSSLLQSFPSFLYSSVKNLRKEKNYSLECAICLLEFEEDSMLRLLTVCYHVFHQECIDLWLSSHKTCPVCRKDLEYSPTNETRKSQEVAEDNLRVVEESRDHVCIEVKEEEGEGEDQRHDDVAAVVSMKEQGEQRFARSHSTGHSIVMIRGGDEGKDDEKYTLRLPEHVALKFVRGGHNCTKSCSSYKDMVAARPAGTCIC. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01312 283 SMART ringv_2 110 153 IPR011016 GO:0008270
Seca10g01312 283 CDD RING-H2_EL5-like 110 153 - -
Seca10g01312 283 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Seca10g01312 283 PANTHER RING FINGER DOMAIN-CONTAINING 9 163 - -
Seca10g01312 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 159 IPR013083 -
Seca10g01312 283 SMART ring_2 111 152 IPR001841 -
Seca10g01312 283 FunFam E3 ubiquitin-protein ligase ATL6 70 159 - -
Seca10g01312 283 SUPERFAMILY RING/U-box 92 159 - -
Seca10g01312 283 Pfam Ring finger domain 110 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01312 Seca-Chr10 13172544 13173395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01312 4 257 Rapid Response to Elicitors AT3G05200 36.122 1.90e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01312 - - ccaj:109800443 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03641 12 93029211 93030083 Seca10g01312 10 13172544 13173395 PCT