Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01304 ATGGGTAGGTCCCCATGTTGTGATGAAGAGAGTGGTGTAAAGAAAGGGCCATGGACACCAGAAGAAGATGAGAAGCTCATTCATTATATCAATAAAAACGGCCATGGCAGTTGGAGAACACTTGCAAAGCGTGCAGGTTTGAATAGGTGTGGCAAGAGCTGCAGGCTAAGATGGGCAAATTATCTGAGACCTGATATCAAGAGAGGGAAATTCACTGAAGAAGAGGAGCGAATTATCATCAACCTTCATTCAGTTCTCGGAAACAAATGGTCGAAGATTGCAGCACATCTTCCAGGAAGAACTGATAATGAGATCAAGAATTTCTGGAACACTCATATAAGGAAAAAGCTTCTCAAGATGGGACTTGATCCAGAAACTCACAAGCCAAGGACTGACTTCAATCACCTCATGAGTCTTTCCCAATTGCTTGGGTTTGGCATGTCATCAAACTTTGGAAATGCTATGAGTAGTAGCACTTGGGGAAACAACAACCCTCTTGGTTTACAAGCAGATATCACTCAACTAGCCAAAATGCAACTGCTGCAAAATCTGTTGCAAATTATGAATAACAACTCATTTGTTAACATGAGTAACCCTTACCTCTTGGGAAATCCCAGCCTCAACCCATTTAATGTGTTCCTCAATGGAACAAACCCCCTTCAAAACAAGGAGCCTGTGGTCTTGAGTGGTGAAGGATATGCAAACCCTGCTCTGTACTCTCAAGCACAGAGTGATGAGTCAAAAACATGGGCAGAGGTAGAGGGTGGATCTAATCCACCACAAGATGTTGATTACAAAAAAATCATGAGCAACAGCAATACTTCACTTGAAAATTATCAAGAAGAAAACCCACTGCCAGCATTAGTTCCATCCTCTCCAAGGACAGGAACCTTCAACCAAATGGACAGTGGCTGTAACACAGCTCAAACATCCACTCTGTCACCTTCCAACACAATCTTTGATGATTGGGAGAAGTTCCTTAACGATGACACAAGTGGTTCCTACTGGAAAGAGCTTCTAGACCTGACATCCACTTCTGCGTCACCAATTTCGTGGTAG 1059 0.4297 MGRSPCCDEESGVKKGPWTPEEDEKLIHYINKNGHGSWRTLAKRAGLNRCGKSCRLRWANYLRPDIKRGKFTEEEERIIINLHSVLGNKWSKIAAHLPGRTDNEIKNFWNTHIRKKLLKMGLDPETHKPRTDFNHLMSLSQLLGFGMSSNFGNAMSSSTWGNNNPLGLQADITQLAKMQLLQNLLQIMNNNSFVNMSNPYLLGNPSLNPFNVFLNGTNPLQNKEPVVLSGEGYANPALYSQAQSDESKTWAEVEGGSNPPQDVDYKKIMSNSNTSLENYQEENPLPALVPSSPRTGTFNQMDSGCNTAQTSTLSPSNTIFDDWEKFLNDDTSGSYWKELLDLTSTSASPISW. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01304 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Seca10g01304 352 FunFam Transcription factor MYB39 70 131 - -
Seca10g01304 352 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Seca10g01304 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Seca10g01304 352 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca10g01304 352 FunFam MYB-related transcription factor 14 67 - -
Seca10g01304 352 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Seca10g01304 352 Gene3D - 70 117 - -
Seca10g01304 352 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Seca10g01304 352 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Seca10g01304 352 CDD SANT 70 113 IPR001005 -
Seca10g01304 352 SMART sant 14 64 IPR001005 -
Seca10g01304 352 SMART sant 67 115 IPR001005 -
Seca10g01304 352 CDD SANT 17 62 IPR001005 -
Seca10g01304 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca10g01304 352 Gene3D - 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01304 Seca-Chr10 13081327 13082988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01304 1 341 MYB Transcription Factor Family AT4G17785 42.659 2.52e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g01304 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01304 K09422 - gmx:100810159 524.628