Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01303 ATGGTTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCTACCATTAGGAATGCAGATGTGATTGCTGTTGTACAGGGAGGGAGGATTGTGGAAACTGGTAACCATGAAGAACTCATTTCCAACCCAAATAGTGTATATGCTTCTCTTGTTCAACTCCAAGAGGCAACTTCTTTGGAACGCCTACCCTCAGTTGGATCTAGCTTGGGACGACAATCAAGCATAAATTACTCAAGAGAATTATCCCGTAGTGTCAGAAGCTTCGGTGGTAGTTTTAGATCAGATAAGGACTCTATTGGTCGGGTTTGTGCTGATGAAGGAGAAAAGGGAGGCAAGTCAAAGCACGTTTCAGCAAGAAGGCTATATTCTATGGTTGGTCCTGATTGGTTTTATGGGGTTTTTGGGACCTTATGTGCATTTGTTGCTGGAGCACAAATGCCACTTTTTGCACTTGGAATATCTCATGCTCTTGTATCATACTATATGGACTGGGATACAACACGTCATGAAGTAAAAAAGATTGCTTTCCTTTTCTGTGGAGCAGCAGTTATAACTATCACTGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTTACCCTTCGTGTCAGAGAAATGATGTTTGCTGCTATTCTGAAGAATGAAATTGCCTGGTTTGATGATACAAGCAACACAAGTTCTATGCTTTCTTCGCGTTTAGAGACTGATGCAACTTTATTACGAACTATAGTTGTTGATCGTTCTACAATTCTGTTACAAAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCCTCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAATTTGAGCAAAGCATATCTAAAAGCCAACATGCTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCTGCATTTTGTTCTGAAGAAAAGATCCTTGACCTTTATTATAATGAGCTTATTGAACCTTCCAAACGTTCATTTCAACGGGGCCAAATTGCTGGCATATTCTATGGCATTTCTCAATTCTTTATTTTCTCATCTTATGGCCTAGCCTTGTGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGTCTTTTATGGTTTTAATTGTAACAGCATTGGCTATGGGGGAGACTTTGGCACTAGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAATCAGGTATAATGTGTGATACTGGAGAAGAGTTGAAGACAGTGGAGGGAACAATTGAGCTTAGAAGAATCCATTTCAACTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTCAATCTAAAAGTTCCTGCAGGCAAGAGTATTGCCTTAGTAGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGGAAGGTGTTAATTGATGGAAAAGACATCACGAGACTTAATCTGAAATCTCTTAGGAAGCATATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATATATGAAAATATTCTTTATGGGAAGGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCTAAGCTAGCAAATGCTCATAACTTTATCAGTGGTCTTCCAGATGGCTACTCCACCAAAGTGGGTGAAAGAGGAGTGCAACTATCTGGTGGCCAGAGACAAAGAGTGGCCATTGCCAGAGCTGTTTTAAAGAACCCTGAAATCTTGCTACTAGATGAAGCCACTAGTGCATTGGATGTGGAGTCAGAGCGTGTAGTACAACAAGCTTTGGACAGATTAATGCAGAACAGAACAACAGTTATGGTGGCACATAGGCTATCCACAATAAGGAATGCAGACCAAATCTCAGTTTTACAGGATGGGAAGATAATTGAGCAAGGGACTCATTCAAGTCTTATAGAAAATAAAAATGGGGCATACTTTAAGTTAGTCAACCTTCAACAACAACAACATCAATCATAG 2091 0.4032 MVGRTTVIVAHRLSTIRNADVIAVVQGGRIVETGNHEELISNPNSVYASLVQLQEATSLERLPSVGSSLGRQSSINYSRELSRSVRSFGGSFRSDKDSIGRVCADEGEKGGKSKHVSARRLYSMVGPDWFYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFAAILKNEIAWFDDTSNTSSMLSSRLETDATLLRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKILDLYYNELIEPSKRSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGIMCDTGEELKTVEGTIELRRIHFNYPSRPDVIIFKDFNLKVPAGKSIALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDITRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPDGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYFKLVNLQQQQHQS. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01303 696 ProSitePatterns ABC transporters family signature. 591 605 IPR017871 GO:0005524|GO:0016887
Seca10g01303 696 Pfam ABC transporter transmembrane region 134 405 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g01303 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 690 IPR027417 -
Seca10g01303 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 452 688 IPR003439 GO:0005524
Seca10g01303 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 54 IPR027417 -
Seca10g01303 696 PANTHER ABC TRANSPORTER B FAMILY 1 57 IPR039421 -
Seca10g01303 696 SMART AAA_5 479 665 IPR003593 GO:0016887
Seca10g01303 696 Gene3D - 442 696 IPR027417 -
Seca10g01303 696 FunFam ABC transporter B family member 2 253 449 - -
Seca10g01303 696 Gene3D - 1 62 IPR027417 -
Seca10g01303 696 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 133 419 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca10g01303 696 FunFam ABC transporter B family member 4 442 695 - -
Seca10g01303 696 Pfam ABC transporter 471 619 IPR003439 GO:0005524
Seca10g01303 696 CDD ABC_MTABC3_MDL1_MDL2 452 690 - -
Seca10g01303 696 SUPERFAMILY ABC transporter transmembrane region 114 433 IPR036640 GO:0005524|GO:0016020
Seca10g01303 696 Gene3D ABC transporter type 1, transmembrane domain 99 441 IPR036640 GO:0005524|GO:0016020
Seca10g01303 696 CDD ABC_6TM_Pgp_ABCB1_D2_like 122 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01303 Seca-Chr10 13064390 13071897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01303 106 696 Calmodulin-binding Proteins AT2G36910 41.860 1.17e-133 423