Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01301 ATGAGAAGGACGACGGCGAAACAGCACCATCATGAATCCGACTCTGCAAAGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCAATCGCAATCGCAAGGGAGGAATCGAGGCCCACAACAACACCGTTCCAAATTGAAATTTCGCTATGTCAACAACTCCCAACTGGTTTCTCACTCTAACTCTGTAGCAGCGGAACAACTTTCCCCTGCCCCTAACCCTCAGGATGTTGATGCCACGCCCCCAAATCACGTAATTCAGAACAGTGATGCCTCAGAGCTCAATAGAAACACCGTTGATGAGGAGGCCAATGAAGAAGATGAAGGTTATGGTGATGATAGTGTTGATATTATGGGTAGGCTTGATAAGTTGCTTAGTAATATCCAAGAACCTGAATTGTCCGAGGAGCATATCACAATCAATGACCAATTGCAGCAAGATGAGTTGCTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTTAGCCTTGAGAGATGGAAAGGCCTTCGTTGCTTTCAGATACACATACACATTGATGTTTTGGGTGAAATTGCCATTACCTCTAAGCTGAACTCTGCTAATGAACTTGAGACTGTAAGCAGCAAGTCAGATGACTTCCTATACTCTTTCAAAGTACAATATCTTCCACCAATTGTTTTGACATGTTTATTGCCTAAGTCATACCCAAGCCACCAACCACCTATATTTACAATCTCTGTTAAGTGGTTAGAATCATCAAAGATTTTAAGTCTCTGCTCCGAGTTGGATTCGATATGGGCAGAACAGCAGGGACAGGAAGTAATTTACCACTGGGTTGAATGGTTACATAGTTCTTCTCTTTCACATCTGGGATTTGATAAGGAGATTATACTAGGTCCTTATGGCATGAATCGTGTTGTAGACATGCGAGTGCTTTCAGGTATCAGATGCATTGATGTTGATATTCCTTTTCTACGAAGCTACAACAATGAGAGACACCATGAGAACTTCCTCAAAGAATTACATGAATGTTGCATTTGCTATAGTGAATATCCCGGTACTGAGTTTGTCCAGTTACCGTGTAAGCATTTTTTTTGCCTCAAATGCTTGCGGACCTTTACTCAGATACATGTAAAAGAAGGAACCGTTAGCAATATTCAATGTCTTGATGCAAAATGTACGGTTATGATTCCACCTGGCCTTTTAAAACATTTGCTGGATGACCAAGATTTTGAACGTTGGGAATCCATGATGTTGGAGAAATCGCTTGCATCAATGTCTGATGTTGTGTTTTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTTTTTTAGCTTTTGTACCCTTTGCAGGGAACGGCGCCATGTTGGCATAGCATGCATGACACTGGAAATGAAACTTAAGATTTTACAGGACCGTCAAAATTCATCTCAATTAAAGGGAGACCAAAAGCGTAGGGAACTTGAAATGATCAATGAAATGCTCAGTATGAAAGAAATTCGTCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGCAACAAAATGAAGTGCAGTAATTGTGAACAGTACTTCTGCTACCGTTGCAACAAAGCAATTGATGCATCGGATCCATATGGACATTTCAGGGATGGGTCGTGTGAATTGTTCCCACGAGAAATGGTTGAGACCTGGCAAGAGCGCATAAATCCTCGCCAAGCAGTAGGACAATTACAGGCTGAACTCTTTCCTCAACGTGGAACGACATGTCCTAGTTGTCGTCAATTTAATGCAAAGATTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTATGCAACGAGATTGTCAGGCGCGGCACTAGGCATTATGGACCAAAAGGCTGCAAGCAGCATACCGAGGGATAG 1932 0.4224 MRRTTAKQHHHESDSAKPSSSSSSSSSQSQSQGRNRGPQQHRSKLKFRYVNNSQLVSHSNSVAAEQLSPAPNPQDVDATPPNHVIQNSDASELNRNTVDEEANEEDEGYGDDSVDIMGRLDKLLSNIQEPELSEEHITINDQLQQDELLVVESIYGENVFSLERWKGLRCFQIHIHIDVLGEIAITSKLNSANELETVSSKSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLESSKILSLCSELDSIWAEQQGQEVIYHWVEWLHSSSLSHLGFDKEIILGPYGMNRVVDMRVLSGIRCIDVDIPFLRSYNNERHHENFLKELHECCICYSEYPGTEFVQLPCKHFFCLKCLRTFTQIHVKEGTVSNIQCLDAKCTVMIPPGLLKHLLDDQDFERWESMMLEKSLASMSDVVFCPRCETPCIEDEDQHAQCPKCFFSFCTLCRERRHVGIACMTLEMKLKILQDRQNSSQLKGDQKRRELEMINEMLSMKEIRRDSKLCPSCDMAISRTEGCNKMKCSNCEQYFCYRCNKAIDASDPYGHFRDGSCELFPREMVETWQERINPRQAVGQLQAELFPQRGTTCPSCRQFNAKIGNNNHMFCWACQSHYCYLCNEIVRRGTRHYGPKGCKQHTEG. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01301 643 SMART ring_2 424 512 IPR001841 -
Seca10g01301 643 SMART ring_2 592 621 IPR001841 -
Seca10g01301 643 SMART ring_2 336 383 IPR001841 -
Seca10g01301 643 ProSitePatterns Zinc finger RING-type signature. 353 362 IPR017907 -
Seca10g01301 643 CDD BRcat_RBR_RNF14 415 466 - -
Seca10g01301 643 CDD Rcat_RBR_RNF14 494 559 IPR047548 GO:0008270
Seca10g01301 643 Gene3D Ubiquitin Conjugating Enzyme 133 283 IPR016135 -
Seca10g01301 643 SUPERFAMILY RING/U-box 496 551 - -
Seca10g01301 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 331 419 IPR013083 -
Seca10g01301 643 FunFam RBR-type E3 ubiquitin transferase 477 586 - -
Seca10g01301 643 SUPERFAMILY UBC-like 140 276 IPR016135 -
Seca10g01301 643 Pfam IBR domain, a half RING-finger domain 404 462 IPR002867 GO:0008270
Seca10g01301 643 Pfam IBR domain, a half RING-finger domain 503 542 IPR002867 GO:0008270
Seca10g01301 643 ProSiteProfiles TRIAD supradomain profile. 332 562 IPR044066 -
Seca10g01301 643 SUPERFAMILY RING/U-box 331 415 - -
Seca10g01301 643 MobiDBLite consensus disorder prediction 1 112 - -
Seca10g01301 643 SUPERFAMILY RING/U-box 404 467 - -
Seca10g01301 643 CDD RING-HC_ITT1-like 330 389 - -
Seca10g01301 643 SMART ibrneu5 404 462 IPR002867 GO:0008270
Seca10g01301 643 SMART ibrneu5 491 556 IPR002867 GO:0008270
Seca10g01301 643 MobiDBLite consensus disorder prediction 17 38 - -
Seca10g01301 643 ProSiteProfiles RWD domain profile. 146 281 IPR006575 GO:0005515
Seca10g01301 643 MobiDBLite consensus disorder prediction 45 68 - -
Seca10g01301 643 FunFam RBR-type E3 ubiquitin transferase 331 415 - -
Seca10g01301 643 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 147 544 IPR031127 GO:0004842|GO:0016567
Seca10g01301 643 Pfam RWD domain 142 276 IPR006575 GO:0005515
Seca10g01301 643 SUPERFAMILY RING/U-box 587 640 - -
Seca10g01301 643 ProSiteProfiles Zinc finger RING-type profile. 336 380 IPR001841 -
Seca10g01301 643 MobiDBLite consensus disorder prediction 79 93 - -
Seca10g01301 643 SMART RWD2001b 146 281 IPR006575 GO:0005515
Seca10g01301 643 FunFam RBR-type E3 ubiquitin transferase 132 283 - -
Seca10g01301 643 Gene3D - 478 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01301 Seca-Chr10 13012099 13017693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01301 331 564 ARIADNE family AT3G27710 24.066 1.62e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01301 K11971 - gmx:100500662 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01301 10 13012099 13017693 Seca10g01301 10 13012099 13017693 ECH