Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01300 ATGGACGGAACAAGCGGCGGAGACGGCGGCTCAGCCCAGTTGCCGGCGCCGGCGCCGATGTCGAACGCGAACGCGCCTCCGCCGTTTCTGAGCAAGACGTATGACATGGTGGATGACCCTTCAACAGACGCGATAGTGTCTTGGAGCGCAACCAACAACAGCTTCGTAGTTTGGGACCCGCCCGAATTCGCAAGGGACCTTTTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTAGGCAGTTAAATACATATGGTTTCAGGAAGGTCGATCCTGATCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATAACTCGTAGAAAACCTGCCCATGGACATAATCATCAACAGGCTCAGCAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAGACCACTGATAACCAGCTGCAGGCAATGGTTCAACGGCTTCAGGGAATGGAGCAACGGCAACAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTTCAACAGCAAAATGAGAGCAATAGTAGGCGTATAACTGAAGTTAACAAAAAGCGTCGGCTCAAGCAGGAAGGTATTGTTGAAACAGAGCGTACTACTGCTCCTGATGGACAAATTGTTAAATATCAACCACTGATGAATGAAGCAGCAAAAACAATGCTAAGGAAAATAATGAAATGGGATGCTTCTCGTGTAGAATCTTTTAATAAAAACCCTGAAAATTACTTGATTGGTGATGGTTCATCATCCAGTGCAATGGACAGTAGCAGCACTTCAAGCTGGACTTCTGGAGTAACACTTCAAGAAGTCCCTCCAGCTTCAGTGCAGTCTTCTCACATTCCAGCTGCAACGGTGACTCAAGGACATGTCCCCTCAGCAGAAAAACCTCCTGCAGTTTCTGAAAAAGTTATAAAGGATGGAGCACATGAGGCACCTTCTATCCCTGTTTCTCAAACAGATGTGATCATGCCTGACCTTCCTTCAATACCGGAGATAGTTCCAGGAAGTATTCTTGATATTCCTGAGGAAAATTATATGACTGCTGAGACAGATGAGGGATATATGGATCCTAATTCACTGGGAGTTGGTGGGTCATTTCCCATTGATTTTGAAGGTATTTCATCTGATGCAGACATCGATGATTTGTTAGCCAATCCTTCTATTTGGGATGATCTTTTACGAACTCCAGTTCCAGAGGATATTGAGACCAATGTTGCCGAAGTATCTAAAGGGAATGAGGTACAGCCAACGGAAAATGGATGGGACAAAATTCAACATATGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCAGAAAGAGTTGATTGTCTATGA 1491 0.4567 MDGTSGGDGGSAQLPAPAPMSNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNSRRITEVNKKRRLKQEGIVETERTTAPDGQIVKYQPLMNEAAKTMLRKIMKWDASRVESFNKNPENYLIGDGSSSSAMDSSSTSSWTSGVTLQEVPPASVQSSHIPAATVTQGHVPSAEKPPAVSEKVIKDGAHEAPSIPVSQTDVIMPDLPSIPEIVPGSILDIPEENYMTAETDEGYMDPNSLGVGGSFPIDFEGISSDADIDDLLANPSIWDDLLRTPVPEDIETNVAEVSKGNEVQPTENGWDKIQHMDQLTEQMGLLSSDAERVDCL. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01300 496 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 297 IPR027725 -
Seca10g01300 496 MobiDBLite consensus disorder prediction 1 27 - -
Seca10g01300 496 MobiDBLite consensus disorder prediction 119 138 - -
Seca10g01300 496 Gene3D - 21 119 IPR036388 -
Seca10g01300 496 SUPERFAMILY "Winged helix" DNA-binding domain 24 118 IPR036390 -
Seca10g01300 496 Pfam HSF-type DNA-binding 29 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g01300 496 Coils Coil 147 174 - -
Seca10g01300 496 SMART hsfneu3 25 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g01300 496 ProSitePatterns HSF-type DNA-binding domain signature. 68 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g01300 496 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g01300 496 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g01300 496 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g01300 496 MobiDBLite consensus disorder prediction 291 326 - -
Seca10g01300 496 FunFam Heat shock transcription factor 1 22 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01300 Seca-Chr10 13005656 13009205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01300 4 487 HSF AT1G32330 53.635 8.51e-169 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca10g01300 HSF_DNA-bind 4.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01300 K09419 - gmx:100794897 772.311