Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01288 ATGGAGCTGTTCCCAGCACAACCAGACTTGTCCTTGCAAATCAGTCCACCAAACACCAAACCCACATCTAGTTGGAGGAGAACCACAGAAGAAGACATGGATTTGGGGTTTTGGAAGAGAGCTTTAGAATCCAGAAACTCCATATCATCAATGGCTAAAACAGATACTACCTGTTTTGACCTTTCACTCTCAAATCCAAGACCTTCTTCAGAATCCAACAACACTTCAAACCTCATTCACCACTTCCAAAATGGTAATGCAGCAAACCTTAACCCTTTCCAATCTTTTCAGCAAAACCATTACTTTCACCACCAGCAACCACTCTTTCAACACCACCCTCCACAACAACACCAAAGCCTAAGCCAAGAACTTGGTTTTCTCAGACCCATCAGAGGAATCCCAGTTTACCAAAACCCTCCTCCTATGCCATTCACTCAACATCATCATCATCATCCACTTGATACTTCTTCAACCCCTTCTTCTCTTTCCAACACCAACACAGCTTCAACCCCTTTTCAATCTCAGGCTTTGATGAGGTCAAGATTCTTGTCACGCTTCCCTGCTAAGCGTAGCATGAGAGCTCCAAGGATGCGTTGGACTACTACACTCCATGCTCGCTTTGTTCATGCCGTTGAGCTCTTGGGTGGCCATGAAAGGGCAACTCCAAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTCACTTTAGCCCATGTTAAGTCTCATTTACAGATGTACCGGACGGTGAAAACCACAGATAGAGCAGCAGCTTCCTCAGGGCAATCGGATGTTTATGACAATGGATCATCTGGAGATACTTCTGATGACTTAATGTTTGATATCAACTCTTCAAGAAGATCTGATCTCTCCATTAAGCAGCAGGGAAGATCAAGTGTTAATCAAGATAATAATAAGGAATGTCATGCCCTTTGGAGCAACTCTTCCAGGGAAGCTTGGTTGCATGGCAAGCCAAAGGGTGATTCTTGTGTTGGAAACGTGCCTTCTCTTGAGAAGGAAATTGATCCAAAATGCTTAAGCTATGAGAGACTATCAGATGGAAGTTCATCCTCAAATGTTTCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCTTGGGCCAGCCCCTTTAA 1140 0.436 MELFPAQPDLSLQISPPNTKPTSSWRRTTEEDMDLGFWKRALESRNSISSMAKTDTTCFDLSLSNPRPSSESNNTSNLIHHFQNGNAANLNPFQSFQQNHYFHHQQPLFQHHPPQQHQSLSQELGFLRPIRGIPVYQNPPPMPFTQHHHHHPLDTSSTPSSLSNTNTASTPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDINSSRRSDLSIKQQGRSSVNQDNNKECHALWSNSSREAWLHGKPKGDSCVGNVPSLEKEIDPKCLSYERLSDGSSSSNVSGSSPKKPNLDLEFTLGQPL. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01288 379 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 248 IPR006447 GO:0003677
Seca10g01288 379 MobiDBLite consensus disorder prediction 138 174 - -
Seca10g01288 379 Pfam Myb-like DNA-binding domain 196 247 IPR001005 -
Seca10g01288 379 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 378 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca10g01288 379 Gene3D - 194 251 - -
Seca10g01288 379 SUPERFAMILY Homeodomain-like 192 248 IPR009057 -
Seca10g01288 379 MobiDBLite consensus disorder prediction 155 174 - -
Seca10g01288 379 MobiDBLite consensus disorder prediction 253 279 - -
Seca10g01288 379 MobiDBLite consensus disorder prediction 1 28 - -
Seca10g01288 379 FunFam Myb family transcription factor 193 251 - -
Seca10g01288 379 MobiDBLite consensus disorder prediction 348 379 - -
Seca10g01288 379 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01288 Seca-Chr10 12918643 12923657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01288 1 378 G2-like Transcription Factor Family AT4G17695 37.500 2.33e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g01288 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01288 - - aprc:113868756 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01288 10 12918643 12923657 Seca10g01288 10 12918643 12923657 ECH