Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01287 ATGGTGGAAAAAAGAGTGTGTTTATCTAAGGAGGTTAGAAATGGGTTAGAAATTTTGAAGCGTAAAAGGCTTGAGCGCGCCAAATCTATCACTGCCACCCAGACAAGCATTGCTAACATGATGAACAGAAGTGGAGGAGATGCGTTAAGAGCCTCAGGATCATGTGGCATGGGATTGCATGGTAATGCAGATGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACACCAGTGATCTGGATTGGACTGATAAAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGACCCCTTGATATACTTGCAAAAGATAGCTCCAGAAGCATCTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGATTGTTTTAATGAAGGAGAAACCAGGATTCAAATTTACAACTAGGGTGCAGCCCCTTCGCCTAGCTGAATGGGATACCGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCGAACAAGGTTTTTGCACGAAGATATTGCAGTGCTGGATGTCTTCCTGCAACATACTTGGAAAAAGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCATCTCCCACCGATGAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCACGATTGCACAAATCAGTTTTGCGGCTCTTGGAAGCGTCAATTCCGGGAGTAACAGAACCCATGCTGTACATTGGAATGTTGTTTAGCATGTTTGCTTGGCATGTGGAGGATCATTATCTGTACAGCATTAATTATCATCACTGTGGGGCATCAAAAACATGGTACGGTATCCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTTTATACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTGTTTCCACCAAATATTTTGTTGGAGCATAAGGTCCCTGTCTACAAAGCAGTTCAAAAGCCGGGGGAGTTTGTAATAACCTTCCCTAGAGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATGGGTGATTGGTTTCCTCTAGGGGCTATTGCTAGCCGGAGATATGCACTTCTTAACAGGGTTCCTTTGCTGCCCCATGAGGAACTTCTTTGCAAAGAAGCAATGCTTCTTCATACATGCTTGGAACTTGAAGATTCAGACTTTCCCTCTTTAGACTCATTTTCTCATAAGAGTATTAAGATTTCTTTCGTTAATTTGATGCGTTTCCAGCATTGTGCTCGCTGGTTCCTAATGAAATCAAGGGCATGTATAAGTGTGGCTTCTCATTCACATGGCACAATTCTCTGTAGTCTTTGCAAACGTGACTGCTATATAGCTTATGTTGACTGCAACTGTCACATGCACCCTGTGTGCCTACGTCATGATGTTGAATCTGTTGACTTCATATGTGGGAGCAAACACACACTTTATGTGAGGGAGGATATTACGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATACTGAATGAGATAAGCAAGCAAACTGAAAGTGACCAAAATATGTATTCATACCCATTGTCAAAAATGTTTCAGAGAGCTGAAGCAAATGGATACTCACCTTATTGTGAGCTAAAACTTGATTCTGTTATAGAATTTTATACAACTCCAGAACAGTCAACAAACAATCAAGAGTGTGGTACACAAAGTCAATTTGTTTTCAGACATTTCTCTGAAAATCATAAACTAGAAGTTTCTGAAATTTCCTTTTCTTCTGGTGCATCCACTCTTTGTTCTGTTTCAGAGCCTCTTGACAACTTCTCTGCTCCCAAGAATGTATGTCCTATGAATATGGTTTTTGAATATTGTCATTGCATATAA 1998 0.4079 MVEKRVCLSKEVRNGLEILKRKRLERAKSITATQTSIANMMNRSGGDALRASGSCGMGLHGNADAFSKRKVDKFDTSDLDWTDKIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGIVLMKEKPGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDELGNSKWNLKKLSRLHKSVLRLLEASIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLHTCLELEDSDFPSLDSFSHKSIKISFVNLMRFQHCARWFLMKSRACISVASHSHGTILCSLCKRDCYIAYVDCNCHMHPVCLRHDVESVDFICGSKHTLYVREDITDMEAAAKMFEQEDGILNEISKQTESDQNMYSYPLSKMFQRAEANGYSPYCELKLDSVIEFYTTPEQSTNNQECGTQSQFVFRHFSENHKLEVSEISFSSGASTLCSVSEPLDNFSAPKNVCPMNMVFEYCHCI. 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01287 665 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Seca10g01287 665 FunFam Lysine-specific demethylase isoform A 83 432 - -
Seca10g01287 665 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 583 - -
Seca10g01287 665 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Seca10g01287 665 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Seca10g01287 665 SMART JmjN_1 87 128 IPR003349 -
Seca10g01287 665 ProSiteProfiles JmjC domain profile. 232 405 IPR003347 -
Seca10g01287 665 Pfam jmjN domain 89 121 IPR003349 -
Seca10g01287 665 Gene3D Cupin 88 440 - -
Seca10g01287 665 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Seca10g01287 665 SMART cupin_9 232 405 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01287 Seca-Chr10 12868159 12874749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01287 85 548 JUMONJI Transcription Factor Family AT2G34880 32.965 1.95e-64 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca10g01287 JmjC 4.6e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01287 - - gmx:100798611 1210.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01287 10 12868159 12874749 Seca10g01287 10 12868159 12874749 ECH