Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01286 ATGTATGGGGATTGTCAAGTAATGTCAACTATGGGAGGAAACGTAGTAGTAAACTCAGATTCTCTCTTCTCTTCTTCCATCCAGAACTCTAACTTCAACTTCATGGCTTTCCAGCCTTTTCCTCACATGTTTTTACAACAGAAAGAAGAAGATGGGATGATGTTGAGAGGGAAGGAAGAGATGGAGAGTGGTTCTGGTAGTGAGCAAGTTGAAGACAAGTCAGGGAATGAGCAAGAAAGTGAACAGCCTAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCACCCGGATGATAAGCAGAGGCTAAAATTGAGCCATGATCTAGGCCTGAAGCCTCGTCAGGTTAAGTTCTGGTTCCAGAATCGCCGAACACAGATGAAGGCACAACAAGACCGGGCAGATAATGCGATACTTAGAGCAGAAAATGAGAATCTCAAGAATGAGAACTATCGGTTACAAGCAGCATTACGAAGTATTATGTGTCCCAATTGTGGTGGTCCATGCATAATGGGCGCTGAGTTGGGCTTGGATGAGCAACAACTTCGACTTGAAAATGCCCGCTTAAGAGAAGAGTTAGAACGTGTGTGTTGTATCACTTCAAGATATACTGGGCGTCCAATCCAAACAATGGGAGCAGCTCCTGCTCTTATGGCTCCTTCATTGGATTTGGACATGAACATATACCAAAGGCATTTTGCGGATTCTATTGCTCCTTGCACAGAAATGATTCCTGTGCCCATGTTGCCTCCTCCTGAAGCTTCACCGTATCCAGAGAGTGGTATCTTAATGGAAGATGACAAGTCTATGGCCTTGGAGCTTGCAGCATCTTCCATGGCTGAGCTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATACGAAGCAGTGAGAATGAAAGGGAAGTGCTTAATTATGAAGAGCATGCGAGGCTGTTTCCATGTCCTTTGAATCTCAAACACCGAAGTGAACTGAGGACAGAAGCTAGCCGTGACACTGCTGTGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTCTCCAAATTATATCTTCTGGTGCTTCAGGTCATGCAAGTGGGACTCTTCAGCTTATGTATGCAGAATTTCAAGTTATTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTATTGACAGCTTGCACCAAAATTTTCACCCTTCCTATCCCAGATACTGCAGGAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAACATGCAAAAGTAGAAGAGAAACCTGTTCATCAGATACTCTGTAACTATGTGTACAGTGGAATGGCTTTTGGAGCACAGCGCTGGCTAGGAGTTTTGCAGAGACAATGTGAGAGGGTCGCCAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCACCAGAAGCGCGAAAGAACTTGATGAAACTATCCCAAAGAATGATAAAGACGTTTAGCCTCAACATGAGCACCTGCGGTGGTCAATCATGGACAGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCAAGTGGGGTTATTCTCGGTGCAGTTTCAACCACTTGGCTGCCCTATCCTCATACCAAAGTCTTTGATCTCCTCAGGGATGAACGCCACAGATCTCAGATGGATGCTCTTTCCAATGGAAACTCATTAAATGAAGTTGCTCACATTGCAAATGGTTCACATCCTGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCAAGTAACTCATCCCAGAATGTAGAGCTAATGCTACAAGAGAGTTGCACAGATCAGTCTGGAAGCTTAGTAGTATACACCAACATCGATGTGGAATCCATCCAACTAGCCATGAGTGGAGAGGACCCTTCTTGCATTTCCCTTCTTCCTCAAGGATTCATGATAGTTCCAATGGCATCATCCAACAATGGTGACACACAATGCCTTGCCATGGATGGAAATTCATCTGAAGCTGTCAATGGATCAGCATCTACTACTAGTGGTGCCAGAAATTCAGGTTGCCTTCTCATCATGGGGCTGCAAGTTCTGGCAAGCACAATCCCTTCTGCAAAGATCAACCTTTCAAGCGTGACAGCAATCAATAACCACCTCTGCAACACTCTGCACCAAATTGAAGCTTCTCTATGTAGCACTAACAGCTGCCTCGTTGGTTCTTGTTCTGAACCCACCACTAGTGCAGCCCCCAAGCAGTGA 2412 0.4478 MYGDCQVMSTMGGNVVVNSDSLFSSSIQNSNFNFMAFQPFPHMFLQQKEEDGMMLRGKEEMESGSGSEQVEDKSGNEQESEQPKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRADNAILRAENENLKNENYRLQAALRSIMCPNCGGPCIMGAELGLDEQQLRLENARLREELERVCCITSRYTGRPIQTMGAAPALMAPSLDLDMNIYQRHFADSIAPCTEMIPVPMLPPPEASPYPESGILMEDDKSMALELAASSMAELVKMCQTNEPLWIRSSENEREVLNYEEHARLFPCPLNLKHRSELRTEASRDTAVVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTLQIISSGASGHASGTLQLMYAEFQVISPLVSTRETHFLRYCQQNAEEGTWAIVDFPIDSLHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQILCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLSQRMIKTFSLNMSTCGGQSWTAISDSPEDTVRITTRKITEPGQPSGVILGAVSTTWLPYPHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTNIDVESIQLAMSGEDPSCISLLPQGFMIVPMASSNNGDTQCLAMDGNSSEAVNGSASTTSGARNSGCLLIMGLQVLASTIPSAKINLSSVTAINNHLCNTLHQIEASLCSTNSCLVGSCSEPTTSAAPKQ. 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01286 803 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 82 781 IPR042160 -
Seca10g01286 803 SMART START_1 285 510 IPR002913 GO:0008289
Seca10g01286 803 SMART HOX_1 83 146 IPR001356 GO:0003677
Seca10g01286 803 MobiDBLite consensus disorder prediction 58 92 - -
Seca10g01286 803 Pfam START domain 286 510 IPR002913 GO:0008289
Seca10g01286 803 CDD START_ArGLABRA2_like 280 509 - -
Seca10g01286 803 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Seca10g01286 803 SUPERFAMILY Homeodomain-like 74 143 IPR009057 -
Seca10g01286 803 Coils Coil 136 168 - -
Seca10g01286 803 SUPERFAMILY Bet v1-like 528 778 - -
Seca10g01286 803 Gene3D - 70 156 - -
Seca10g01286 803 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
Seca10g01286 803 SUPERFAMILY Bet v1-like 278 512 - -
Seca10g01286 803 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Seca10g01286 803 MobiDBLite consensus disorder prediction 58 86 - -
Seca10g01286 803 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Seca10g01286 803 FunFam Homeobox-leucine zipper protein HDG1 70 158 - -
Seca10g01286 803 CDD homeodomain 85 143 IPR001356 GO:0003677
Seca10g01286 803 Gene3D - 285 496 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01286 Seca-Chr10 12849969 12855544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01286 8 794 Homeobox Transcription Factor Family AT5G46880 54.941 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca10g01286 START 4.8e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01286 - - gmx:100812829 1320.45