Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01279 ATGGCAACAACAGACGGAGAGGGAGGAGAAGCAGAAGAACGAGAACGAGAAGCTGCACGGCTCAAGGCTCTAGCAGAGGCCAAGTACCAAAGCTCCAAAAACCCCAAAACAGCTCTGAAATACGCAAAGCGAGCCCAGCGTCTTGCCCCTGAGCTTGATGGCATATCAGAGACAGTGACCTCCCTCTCCATTCTCTGCGCCCCCGATTGGTACTCTGTTCTTGATGTAGAGCCCTTCGCAAACGCCAACGCTATTCGGAAGCAGTACAAAAAGCTCGCCTTGCTCCTTCATCCCGACAAGAACCCACACGTGGCCTCCGAAGAAGCTTTCAAGCTCCTTGGTGAGGCTTTCCGTGTTCTCTCTGACAGGTCCCTCAAGAAGGACTACGATGCCAACCTCCGCCTCAGGAGTGAAGAAGAGACCCGAACTTTTTGGACCGCGTGTTCCACTTGCAGGCTCTTGCACCAGTTCGAGAGGAGGTACGTGGGTCATAACCTTGTGTGTCCTAGTTGTAATAAGAGTTTTAAGGCTGTGGAAGCTGTTCAGAGTGATGGGTCTTTGGATGAGGGAGAGGAGAATGGGGGTGAGTTATTGGGGGACATTGTGTTGAGGAAGAAGGAGAAGGGAAAGAAGAAGATGGGTGTGGTTGAGGAATCAAAGGGGGTGAAAGGGAAAGTGGGTGGTGAAAAAGGTGGGAACTTGAAGGGTAAAGTTGGAGATGATGAAGTGGGAAGTGATCGAAGATTGAGGAAGAGAATGCGTACTGTTGGAGAGCTGTTGGAGAGGTCAAAACCTAAGAGGATTGGAACCGGGGAGGAAATGATGACATTGGCTGAATTTCAGTCTAAAGTGAAGAGAAAGGCACAGCAAGAGAAGATGAAGGATAAGGAGGATGAGGAGGAAGGGGGCAGAACAGAGAAGAGGAGATTGAAGAAGAGCGTGGAAAATAAGAAGGGTTTAGAGGTTGGGGAGGTTAGGAGTTTGAAGAAGAGTGAGAAGCCTGCAATCAAGGAGAAGCATGAGCATTCTGTGAAGAGAAAGGGGCTGAGACTAGAGAAGCACCGGGATTCTAGTGGAGGGGAATTGGAAGTCATGGCAGTGGTCGATTCAGATTTTTATGATTTTGACAAAGATAGAGTGGAGAGGAGCTTCAAGAAAGGCCAAGTGTGGGCAGTGTATGATGATGATGATGGAATGCCCAGGCATTATGCCTTGATTGATGAAACGGTTTCAGCAAACCCTTTTGAAGTAAGAATAAGTTGGTTGGATCTACAGAACAATGGGGATGGAAAGATAGTTAATAGGGAGAAAATGGGGTTTCACATACCCTGTGGGAGGTTTAAAGTTACCAGGAAGGCTTCCATAAATTCACTAAATATCTTTTCCCATGTTGTAGATTGTGACCGGGTAGCATGTGAGGTTTACATAATTTATCCCAAGAAGGGTTCGGTATGGGCACTTTATGGTGAGACAACTCTTGATGCAGATGGAAGACATTTTGCAGATGAGAGCAAGAGATGCTATGACATTGTTGTATTTTTGTCAAGTTACAGTGAGATGAATGGTCTGAGCATGGCATATCTTGATAAGGTTGATGGTTATAAGACAGTATTTAAGAGACAAGAGATGGGGAGTCATGCCATTAGATTTCTAGGAAAGGATGACATGTGCTTGATTTCTCATCAGATTCCTGCACGGAAACTCCCTTGTAAGGATACTCCTGAACTGTTGAAAGATTGTTGGGAACTTGATCCTGCTTCACTTCCTTCACATTTACTTACTATTGGTGGCGTAGATAATTGA 1803 0.4626 MATTDGEGGEAEEREREAARLKALAEAKYQSSKNPKTALKYAKRAQRLAPELDGISETVTSLSILCAPDWYSVLDVEPFANANAIRKQYKKLALLLHPDKNPHVASEEAFKLLGEAFRVLSDRSLKKDYDANLRLRSEEETRTFWTACSTCRLLHQFERRYVGHNLVCPSCNKSFKAVEAVQSDGSLDEGEENGGELLGDIVLRKKEKGKKKMGVVEESKGVKGKVGGEKGGNLKGKVGDDEVGSDRRLRKRMRTVGELLERSKPKRIGTGEEMMTLAEFQSKVKRKAQQEKMKDKEDEEEGGRTEKRRLKKSVENKKGLEVGEVRSLKKSEKPAIKEKHEHSVKRKGLRLEKHRDSSGGELEVMAVVDSDFYDFDKDRVERSFKKGQVWAVYDDDDGMPRHYALIDETVSANPFEVRISWLDLQNNGDGKIVNREKMGFHIPCGRFKVTRKASINSLNIFSHVVDCDRVACEVYIIYPKKGSVWALYGETTLDADGRHFADESKRCYDIVVFLSSYSEMNGLSMAYLDKVDGYKTVFKRQEMGSHAIRFLGKDDMCLISHQIPARKLPCKDTPELLKDCWELDPASLPSHLLTIGGVDN. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01279 600 MobiDBLite consensus disorder prediction 284 342 - -
Seca10g01279 600 CDD DnaJ 69 122 IPR001623 -
Seca10g01279 600 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
Seca10g01279 600 PRINTS DnaJ domain signature 71 89 IPR001623 -
Seca10g01279 600 PRINTS DnaJ domain signature 89 104 IPR001623 -
Seca10g01279 600 PRINTS DnaJ domain signature 105 125 IPR001623 -
Seca10g01279 600 SMART dnaj_3 68 125 IPR001623 -
Seca10g01279 600 MobiDBLite consensus disorder prediction 280 347 - -
Seca10g01279 600 Pfam Domain of unknown function (DUF3444) 364 568 IPR024593 -
Seca10g01279 600 Pfam DnaJ domain 69 130 IPR001623 -
Seca10g01279 600 PANTHER BNAC03G44070D PROTEIN 14 589 - -
Seca10g01279 600 MobiDBLite consensus disorder prediction 222 246 - -
Seca10g01279 600 Gene3D DnaJ domain 65 151 IPR036869 -
Seca10g01279 600 SUPERFAMILY Chaperone J-domain 64 133 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01279 Seca-Chr10 12713529 12715331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01279 2 182 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.516 3.05e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01279 - - lja:Lj2g3v1510610.1 785.023