Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01278 ATGGGCAGCAGTGAGATGGATAAAACCCCAAAAGAGAAGGAGTCAAAGACGCCACCACCTACGTCACAGGAGCAGTCTTCTACCACCAGCACGGGAACAGTTAATCCTGACTGGTCCGGCTTTCAGGCATATTCTCCTATACCTCCACATGGATTTTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGCGTCCAGCATATTATGCCTCCCTATGGTACTCCACCACATCCTTATGTTGCGATGTATCCCCATGGTGGCATATATGCCCATCCATCCATCCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAACGGTATTGCTGAGGCTTCAGGAAATACTCCTGGCAGCATCGAAGCTGATGGTAAGCCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCAAAGAGCGGTGAGAGTGCAAGTGAAGGCACTAGTGAAGGAAGTGATGCCAATTCTCAGAATGACTCTCAATTGAAATCAGGGGGCAGGCGGGATTCTTTCGAAGATGAACCATCTCAAAATGGCAGTTCGGCGCATACTCCTCAAAATGGGGGACTTAATACACCTCATACTGCGGTTAATCAAACTATGTCTATCATGCCTATCACTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGCACACCAACTTCATCCAGCATTCCTGCACTGCGTGGAAAGGTTCCGTCTACTACAGTTGCAGGAGGGATGGTTACTGGTGGATCACGGGATACTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAACTTAAAAGACAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGATCGAGGTTACGCAAGCAGGCCGAGTGTGATGAACTAGCACAGCGTGCTGAAGCTTTGAAAGAAGAAAACGCTTCCCTCCGATCAGAAGTAAGTCGTATCAGGAGTGAGTATGAGCAGCTACTTTCAGAGAATTCAGCTCTCAAGGAGAGGCTTGGGGAACTACCTGGGAATGATGACCTTAGGTCTGGCAGGAATGATCAACATGTGCATAATGACACTCAACAGAGTGGACAGGCAGAGGCTGTGCAGGGTGGTCATTAG 1230 0.4764 MGSSEMDKTPKEKESKTPPPTSQEQSSTTSTGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMPSPNGIAEASGNTPGSIEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGTSEGSDANSQNDSQLKSGGRRDSFEDEPSQNGSSAHTPQNGGLNTPHTAVNQTMSIMPITAGGAPGAVPGPTTNLNIGMDYWGTPTSSSIPALRGKVPSTTVAGGMVTGGSRDTVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSEYEQLLSENSALKERLGELPGNDDLRSGRNDQHVHNDTQQSGQAEAVQGGH. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01278 409 MobiDBLite consensus disorder prediction 111 229 - -
Seca10g01278 409 MobiDBLite consensus disorder prediction 1 42 - -
Seca10g01278 409 CDD bZIP_plant_GBF1 310 360 IPR045314 GO:0003700|GO:0006355
Seca10g01278 409 MobiDBLite consensus disorder prediction 375 391 - -
Seca10g01278 409 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Seca10g01278 409 MobiDBLite consensus disorder prediction 392 409 - -
Seca10g01278 409 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 312 327 IPR004827 GO:0003700|GO:0006355
Seca10g01278 409 Gene3D - 308 362 - -
Seca10g01278 409 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 399 IPR044827 GO:0003700|GO:0006355|GO:0043565
Seca10g01278 409 Pfam bZIP transcription factor 305 367 IPR004827 GO:0003700|GO:0006355
Seca10g01278 409 MobiDBLite consensus disorder prediction 306 328 - -
Seca10g01278 409 Pfam Disordered region downstream of MFMR 135 272 - -
Seca10g01278 409 MobiDBLite consensus disorder prediction 146 198 - -
Seca10g01278 409 SMART brlzneu 305 369 IPR004827 GO:0003700|GO:0006355
Seca10g01278 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 307 370 IPR004827 GO:0003700|GO:0006355
Seca10g01278 409 MobiDBLite consensus disorder prediction 19 40 - -
Seca10g01278 409 Coils Coil 325 373 - -
Seca10g01278 409 MobiDBLite consensus disorder prediction 1 18 - -
Seca10g01278 409 SUPERFAMILY Leucine zipper domain 308 364 IPR046347 GO:0003700|GO:0006355
Seca10g01278 409 MobiDBLite consensus disorder prediction 372 409 - -
Seca10g01278 409 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01278 Seca-Chr10 12705401 12712007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01278 1 403 bZIP Transcription Factor Family AT2G35530 64.390 4.25e-175 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca10g01278 MFMR_assoc 1.1e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01278 K09060 - gmx:778122 709.909