Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01271 ATGGATAAGGGAGAACTTGTTTCCGATGACTTAGTTGTTTGCATTATAGTGAAAGCAATACCAAGTTTGATATTTACTGCTGTTTTGGAAGATAACTGTACATCAAGAACATGTGCTATCTGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAATTTGCAAGCGTGATGCTAGAACTAGAGGTGGTGGTCAGCATTCCGAGCAGCAATTGATGTTCTTGGCTTCTTATCTTCTGGAGCTAAGCCTAATAGACTATAAGTGCATCAAGTTCTTACCATCAGTGGCTGCAGTATATGCTTGA 378 0.4153 MDKGELVSDDLVVCIIVKAIPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPICKRDARTRGGGQHSEQQLMFLASYLLELSLIDYKCIKFLPSVAAVYA. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01271 125 SMART ring_2 38 79 IPR001841 -
Seca10g01271 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 74 IPR013083 -
Seca10g01271 125 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 8 85 - -
Seca10g01271 125 SUPERFAMILY RING/U-box 31 86 - -
Seca10g01271 125 ProSiteProfiles Zinc finger RING-type profile. 38 80 IPR001841 -
Seca10g01271 125 Pfam Ring finger domain 37 80 IPR001841 -
Seca10g01271 125 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 16 86 - -
Seca10g01271 125 Pfam Cyclin, C-terminal domain 90 122 IPR004367 -
Seca10g01271 125 Gene3D - 75 125 - -
Seca10g01271 125 SUPERFAMILY Cyclin-like 91 122 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01271 Seca-Chr10 12637803 12638180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01271 17 123 C3H Transcription Factor Family AT1G22670 56.075 8.36e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01271 K15692 - gmx:100793048 152.91