LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g01270	ATGAGTTTTCTCAATACTCTATCTGGCTATGCTTGGGATGATCCATGGAGATACCCATGGTACTCCTCTACTGCTCTTTATTATCACACTGCTGCTCCTCCTCCATCTTATTTTACTAAGAAGATGGTGCCTAGCTCCATTGGGGAGATGAAGTACTTGAGGTATCTTGATCTGTCTCATAATAACATAGAGAAGCTTCCTAGTTCCATTACCAAGCTTTTCCACTTGCAGACTTTGAAACTGTCCCAATGTCATGTCCTTAAAGAATTGCCAAAAGATTTGGAGGATTTGAGTTGCCTCAAGCATCTACATATAGAGGGATGCTTGGATCTCACTCATATGCCACGGGGGATAAATAAGCTTACTTCTCTACAAACATTGTCACTTTTTGTAGCCAACAAGAACCACTTCCCTGCTTCATTAGACGCTAAAGATGCTTATTTGAAAAATAAACAACACATTCAGTCCTTGACTTTAAGATGGGATTACGATGAGGAGGAGGAAGAAGAGGAAGAAGAGAAGGTAAAGAAAGGAGGAAACAATCTTGATGACAAGGACAATAAATCACTTGATTGTCTTGAGCCACATCCAAATCTGAGAGTGCTACTTGTTGTGGGGTACAATGGTTACACGTTTTCTAACTTGCTCTCTTCTGTTCAATGCCTTGTTAAATTTAGCTTGAATGATTGTCCCAAATGCCAATTTCTCCCACCATTGGATCATCTACCACTCCTCAAGGTTCTAGAACTTCAGAGATTGGACTCTCTGGAATTCATTGCAAAAAATAATGATGAAGGGTCCTCCTCTAGTGCATCATTCTTTCCATCCTTGAAGGAACTCACAATCTCGGATTGTCCTATTCTTAGAAGCTGGTGGGAGAATGAGAAATGGGGAAACGATAGACCTTTTTTTACTTGCATTTCGAAACTAAATGTTCAATGTTGTCCTAAGCTTCATTGCATGCCTCTGTATCCTCATCTTGATGAAGAGCTGGTCCTGGTGGATTCTAGCGTGAAACATATGCGAGATACAATGCATGCTAAAACTTCAGAAGCCTTCCATCCTGTTACGTACTGGACCAGAGGCCCAATACCTTTAGGGCCCAATCCAAATTGGCAAGTCGGATTGGACCGACATGCATGTCGGTTTCGTCTCATCCTTCGGATCGAGATCTCACGATAG	1182	0.4162	MSFLNTLSGYAWDDPWRYPWYSSTALYYHTAAPPPSYFTKKMVPSSIGEMKYLRYLDLSHNNIEKLPSSITKLFHLQTLKLSQCHVLKELPKDLEDLSCLKHLHIEGCLDLTHMPRGINKLTSLQTLSLFVANKNHFPASLDAKDAYLKNKQHIQSLTLRWDYDEEEEEEEEEKVKKGGNNLDDKDNKSLDCLEPHPNLRVLLVVGYNGYTFSNLLSSVQCLVKFSLNDCPKCQFLPPLDHLPLLKVLELQRLDSLEFIAKNNDEGSSSSASFFPSLKELTISDCPILRSWWENEKWGNDRPFFTCISKLNVQCCPKLHCMPLYPHLDEELVLVDSSVKHMRDTMHAKTSEAFHPVTYWTRGPIPLGPNPNWQVGLDRHACRFRLILRIEISR.	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g01270	393	ProSiteProfiles	Leucine-rich repeat profile.	52	73	IPR001611	GO:0005515
	Seca10g01270	393	Gene3D	Ribonuclease Inhibitor	145	349	IPR032675	-
	Seca10g01270	393	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57	42	324	-	-
	Seca10g01270	393	Pfam	Leucine rich repeat	52	108	IPR001611	GO:0005515
	Seca10g01270	393	Gene3D	Ribonuclease Inhibitor	36	142	IPR032675	-
	Seca10g01270	393	SUPERFAMILY	L domain-like	39	322	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g01270	Seca-Chr10	12636251	12637514	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g01270	43	139	WRKY Transcription Factor Family	AT4G12020	37.755	5.36e-09	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g01270	-		K19613	gmx:102662991	456.447