Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01250 ATGGTGGTTTCAGGGAAGAATGTAGGAGATGCGAAATACGCGGCGCTGAAAGCCTTCGGGGATTCGGGGCTACCGGAGAACGTGCTGGAGTGTTGCAAGGGTTTCGATAGGCCTTCTCCGATTCAATCACGAGCATGGCCTTTCTTGTTGGACGGTCGCGATTTGATTGGAATTGCGGCCACTGGATCAGGGAAGACGCTGGCATTTGGAATACCGGCGGTTATGCATGTTCTCAAAAAGCGGAAGAGTAAAGCTTCCAAGGGTCGGAATCCTCTTTGCCTCGTGCTCTCTCCCACTAGGGAGCTAGCTCAACAAATATCGGATGTGATGTGTGATGCTGGTCAGTCTTGTGGTGTGGAATCAATTTGTTTATATGGTGGAACCTCCAAAGGACCACAAATCTCTTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTGTCTGTTGCTTGAATGAAGTTTCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAGATAGTTCGCTCTATACTTGGTCAGACATGTTCTGTTCGGCAAATGGTTATGTTCAGTGCTACATGGCCTTTACCAGTTCATCACTTAGCGCAGGAGTTCATGAATCCTCATCCTGTAAAAGTTGTTGTAGGTTCAGAGGATTTAGCTGCTAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGATCGTGCACGTGATAAGCGTCTGATTGCTTTACTGGAAAAATACCACAAATCTCAGAGGGGTTGGAAGGTTGTTTCAATACATGGGGACAAAGCACAGCATGATCGCACAAAGGCACTGTCATTATTCAAGAAGGCAAGCTGTCCTTTGATGATTGCTACCGATGTGGCTGCACGGGGATTGGATATTCCGGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTAACTACAGAGGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAAAAAGGGGTTGCCCATACATTCTTCACACAGCAGAACAAGGGACTTGCTGGGGAGCTCGTGAATGTTTTAAGAGAAGCAGGACAAATTGTTCCAGATGCTCTCTTGAAATTTGGCACCCATGTAAAGAAAAAGGAGTCAAAGCTTTATGGGGCGCACTTCAAGGAAATTCCTGTGGATGCTCCAAAGTCTCAAAAAATAACATTTGACGATACTGACGAAGAAGACTAA 1242 0.4549 MVVSGKNVGDAKYAALKAFGDSGLPENVLECCKGFDRPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLKKRKSKASKGRNPLCLVLSPTRELAQQISDVMCDAGQSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLNEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMNPHPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLIALLEKYHKSQRGWKVVSIHGDKAQHDRTKALSLFKKASCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKITFDDTDEED. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01250 413 Gene3D - 227 379 IPR027417 -
Seca10g01250 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 368 IPR027417 -
Seca10g01250 413 Gene3D - 3 226 IPR027417 -
Seca10g01250 413 CDD SF2_C_DEAD 237 346 - -
Seca10g01250 413 CDD DEADc 33 224 - -
Seca10g01250 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 18 372 - -
Seca10g01250 413 Pfam Helicase conserved C-terminal domain 257 337 IPR001650 -
Seca10g01250 413 SMART helicmild6 255 337 IPR001650 -
Seca10g01250 413 SMART ultradead3 34 240 IPR014001 -
Seca10g01250 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 226 IPR027417 -
Seca10g01250 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 169 177 IPR000629 -
Seca10g01250 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 230 376 IPR001650 -
Seca10g01250 413 Pfam DEAD/DEAH box helicase 40 207 IPR011545 GO:0003676|GO:0005524
Seca10g01250 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 223 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01250 Seca-Chr10 12382523 12387592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01250 16 345 Eukaryotic Initiation Factors Gene Family AT3G19760 32.768 4.37e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01250 K14811 - gmx:100305353 761.911