Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01245 ATGGCAGCTAACGTGAACTGCGACATGCCCCAAAACACCCTCACTCACCCTCATTGGTACTCTCCAGAAACCGGAATTTACCATAGCATACACGCTCCCTTGGACCTTCCCACTGACCCTTTTCTCGACCTCGTTTCCTTCATTTTTTCTCACCGCCACAATGGGGTTTCCGCCCTTGTTGATTCCTCATCTGGGTGTTCCATTTCTTACTCAAAGTTGTTACCTTTGGTCAAATCCATGGCTTCTGGTCTCCACAGAATGGGTGTTTCACAAGGTGACGTGGTTTTGCTTTTACTTCCCAATTCCATTTACTATCCCATTGTCTTCTTGGGCGTTCTGTATCTAGGTGCTGTTGTAACACCATTGAATCCTCTCAGTAGTATCTATGAAATACGTAAGCAGATTACTGAATGTGGTGTGAGTTTGGCTTTTACTGTACCTGAAAATGTCAAGAAACTAGAACCATTGGGCATTCCTATTATTGCTGTGCCAGAAAATGAGAAGGGTTTGAAGGATGCTTGTTTCTCAGGGTTTTGTAACCTGATTTCTGGTAAATTTGATTTGCCTCAAAGGCCAGTTATTAAGCAGGAAGACACTGCGGGTATATTGTATTCTTCAGGGACTACAGGGGTGAGCAAAGGAGTTGTTCTAACCCATAAAAATCTTATAGCTATGGTTGAGCTTTTTGTGAGATTTGAAGCTTCTCAATATGAACATTCTTGCGTGAAGAATGTGTTTCTAGCTGTTCTGCCAATGTTCCATATATATGGTTTATCACTCTTTGCCATGGGATTGCTGTCTCTGGGTTCCACAGTCATTGTAATGAGGAAATTTGACATTGATGAGGTTATCACGGTGATTGATAAATATAAAGTTACACACTTTCCCGTTGTTCCACCAATGTTGACAGCATTGACAACAAGGGCAAAGTGTATTAATGGAAGTAAGTTGCAGAGTTTGATACAGGTCTCCTGTGGTGCTGCACCTTTGAGTGCAGGAGTAATTAATGACTTTGTCCAAACTTTCCCTAACATTGATTTTATACAGGGTTATGGAATGACTGAGTCAACTGCAGTAGGAACACGTGGCTTCAATACTAAGAAGTTTTGCAAATACTCTTCAATAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTGGCAGACTGGAATAGTGGTGCATTTTTGCCCCCGGGCAGCAGTGGTGAGCTTTGGTTGAGAGGGGCTTCAATTATGAGAGGATACTTGAATAATGAGGAAGCCACAATGTCAACAATTGATAAAGACGGATGGCTACATACTGGAGATGTTGTTTATTTTGATCAGGATGGATATTTACATATATCTGACCGCTTGAAAGATATTATCAAATACAAGGGATTTCAGGTTTCTATTTTTTGGTTCTGA 1404 0.4138 MAANVNCDMPQNTLTHPHWYSPETGIYHSIHAPLDLPTDPFLDLVSFIFSHRHNGVSALVDSSSGCSISYSKLLPLVKSMASGLHRMGVSQGDVVLLLLPNSIYYPIVFLGVLYLGAVVTPLNPLSSIYEIRKQITECGVSLAFTVPENVKKLEPLGIPIIAVPENEKGLKDACFSGFCNLISGKFDLPQRPVIKQEDTAGILYSSGTTGVSKGVVLTHKNLIAMVELFVRFEASQYEHSCVKNVFLAVLPMFHIYGLSLFAMGLLSLGSTVIVMRKFDIDEVITVIDKYKVTHFPVVPPMLTALTTRAKCINGSKLQSLIQVSCGAAPLSAGVINDFVQTFPNIDFIQGYGMTESTAVGTRGFNTKKFCKYSSIGLLAPNMEAKVADWNSGAFLPPGSSGELWLRGASIMRGYLNNEEATMSTIDKDGWLHTGDVVYFDQDGYLHISDRLKDIIKYKGFQVSIFWF. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01245 467 SUPERFAMILY Acetyl-CoA synthetase-like 51 463 - -
Seca10g01245 467 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Seca10g01245 467 Gene3D - 26 453 IPR042099 -
Seca10g01245 467 FunFam Long-chain-fatty-acid--CoA ligase FadD 31 452 - -
Seca10g01245 467 Pfam AMP-binding enzyme 52 457 IPR000873 -
Seca10g01245 467 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01245 Seca-Chr10 12337881 12341804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01245 10 463 Monolignol Biosynthesis Gene Families AT4G19010 58.606 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01245 K01904 - gmx:100804808 797.349