Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01242 ATGGAGAGTGGTGGCAGAGAAGGCTATGATGGGGTGGTGATGACTATGACCAGAGACCCCAAACCAAGGCTGAGATGGACAGCTGATCTTCATGATCGGTTTGTGGATGCTGTTACAAAGCTTGGTGGCCCTGATAAGGCGACTCCCAAGTCTGTTCTGAGGTTAATGGGTTTGAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTAGGAAACAAAATGAAGAACAGCACAAAGAGAATAACAGATGTTCATATGTAAATTTCAGTAATCGTTCTTCAGGGCCTAATACCAGTTACAGAGATGATAATGAAGATAACCAAAACAGAGAAATCCCAATAGGAGAAGCACTGAGGCATCAGATTGAAGTTCAAAAGAGATTGGAAGAGCAGCTAGAGGTACAGAAGAAATTACAGATGAGAATAGAGGCTCAAGGGAAGTATTTGCAAGCAGTGTTAGAGAAAGCACAGAGGAGCCTTTCCCTGGGTGGGCCAGGTAGCCTTGAAGCTTCAAGAATTCAATTGACTGAATTCAACTCTGCTTTGTCAAATTTCATGGAAAATATGAATAAAGATGGCAAAGAAAACATAATAGACATGAATGATTTTTATAATAAGAGCCATAGTTCAGCTTTCCATTATCAAGAAGTAGGGAGAGAAGAAAATAAGGATCAAAAGCCTAAGGTTGAAGGGGATTCAGCACAATTTGACTTAAACATCAAAGGTAGCAATGACCTTGGAGCTGAAATGGAATCCAAGATGCTTTCATATAGGGTATACAATTTTTGA 816 0.3995 MESGGREGYDGVVMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNEEQHKENNRCSYVNFSNRSSGPNTSYRDDNEDNQNREIPIGEALRHQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRSLSLGGPGSLEASRIQLTEFNSALSNFMENMNKDGKENIIDMNDFYNKSHSSAFHYQEVGREENKDQKPKVEGDSAQFDLNIKGSNDLGAEMESKMLSYRVYNF. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01242 271 Gene3D - 20 78 - -
Seca10g01242 271 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Seca10g01242 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Seca10g01242 271 Pfam MYB-CC type transfactor, LHEQLE motif 122 167 IPR025756 -
Seca10g01242 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 226 IPR044848 GO:0003700
Seca10g01242 271 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
Seca10g01242 271 FunFam Myb family transcription factor 20 78 - -
Seca10g01242 271 Coils Coil 134 154 - -
Seca10g01242 271 MobiDBLite consensus disorder prediction 92 111 - -
Seca10g01242 271 MobiDBLite consensus disorder prediction 79 117 - -
Seca10g01242 271 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01242 Seca-Chr10 12309727 12313865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01242 12 193 G2-like Transcription Factor Family AT3G24120 53.476 1.46e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g01242 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01242 - - gmx:100810146 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01242 10 12309727 12313865 Seca10g01242 10 12309727 12313865 ECH