Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01232 ATGAACCTTCCTCCGCCGCCGGTGATGTGGCAACCGCCCTTTACGGTGGCTCAGTGGCAGGAGTTGGAGCACCAAGCTCTCATCTTCAAGTACCTCAAGGCGGGTCTCTCCGTTCCCCCTGACCTCCTCGTACCCATTCGCAAGAGTCTTCAATTGATGTCTCACCCTTCTCTTAAAGTTTTTTCCTTTTATTGTTTTTTTGCAGTGGGGTATTATGGGAAGAAGATAGACCCTGAACCTGGTAGGTGCAGGAGAACCGATGGGAAAAAGTGGAGGTGCTCCAGGGATGCTCACCCTGATTCTAAGTACTGCGACCGCCACATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTCAATCTCAACCTCAATCTTCTTCTTCTTCTGCTACTTCACAACTTGCTTCTTCTACTGGGAGCACAACCACTGCCTCTGCCTCTGCAACTGCAACAACCTTCAACACCCTCCCTCTGCACACTAATGGTTCCAGGGAAGGTTTCAGCTTCACCCTTGGGAACACACACCCTCACCTTCAGATGGACCCTCTCTCTCTTTCTGGTCAGGGTTGCAAGAAACCTTACAGGTTTGGACTGAACTCCGCAGCAGATGAGCACAACATCTTACAGAAAGATCTGGGAAGTGTGAAGTATCAAGGTTATGACTTTACCTCAGATAGTATGTGGTCTCATATGTCCCAGATTCCATCAAACACTGTTTCAGAATCAAGAAGTGTTTCTACTATGGTTGGCAACTCCTACCAACAGCGAACAATGCGAGACACTGAGCTGTTGAACCTCGACACTGGAAGGTCCAAGGAACTTATCTTTAGTGGTGAGTTATGTTCAGCAGGGGGTTTGAAACAGGATTATCATCAGTCCCAGCAGTCTCTCTTCAGTGACTGGCATTGGAAGAAGGATTTAGGTTCCTCTGCCATTGAGTATAGGCCCAACAAGGGTTTTAACGGCAACCCAGATGTCAATGTTGATTCAAATGGTGCTTTATAA 1011 0.4777 MNLPPPPVMWQPPFTVAQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMSHPSLKVFSFYCFFAVGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESQSQPQSSSSSATSQLASSTGSTTTASASATATTFNTLPLHTNGSREGFSFTLGNTHPHLQMDPLSLSGQGCKKPYRFGLNSAADEHNILQKDLGSVKYQGYDFTSDSMWSHMSQIPSNTVSESRSVSTMVGNSYQQRTMRDTELLNLDTGRSKELIFSGELCSAGGLKQDYHQSQQSLFSDWHWKKDLGSSAIEYRPNKGFNGNPDVNVDSNGAL. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01232 336 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca10g01232 336 MobiDBLite consensus disorder prediction 119 146 - -
Seca10g01232 336 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca10g01232 336 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Seca10g01232 336 PANTHER GROWTH-REGULATING FACTOR 5 13 303 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca10g01232 336 MobiDBLite consensus disorder prediction 115 146 - -
Seca10g01232 336 Pfam WRC 78 120 IPR014977 -
Seca10g01232 336 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01232 Seca-Chr10 12187706 12191353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01232 13 152 GRF Transcription Factor Family AT4G37740 51.370 1.03e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca10g01232 WRC 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01232 - - gmx:100809947 464.151