Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01231 ATGTCTGCTACTGAAACCTCTCTCTTGAGGATGGAGCAGATACCTCACAAAGGGAGAGGTCTTGTTGCAGCACAGTCTCTTAAGGCTGGCCAAATAGTCCTCAAAGAATCCCCTCTCATCCTCTACTCTGCTTCCCCTCTCTTCTCTCCATCCTCTTCTTCATCCTTCTCTTACTGTGACCACTGCTTCAGAATCTTACCACCACCACCTACAAACACTGTTCCATGCCCTTCTTGTTCCCACCACCATTTCTGTACCCACAAGTGTCTCTCCATTGCCCTCAATTCCTCCCACTCTTCCTGGGTATGTCAAGCTCTCTCTCTCCTCAGAGACCCCTTTTCACCACTCCTTCAACAACCCCTTGAACGCCAAGTCCAAGCTCGTTTCATTGTTGCTGCTTACAACCTTTCCATTCACTCCCCTTCTGATCTCCACACTTTGCTTTCTCTTCATGGTACCCCTGATGCTCCCATATTTGATGCTGCTCATTTCCTTCATTCTCTTATCTCACCCCTTTTGCCACCCCATAGTCATTTATCTGTTGAACTAGCTGCCCAACTTATTGCTAAGGATAGACTCAACTCCTTTTGCTTAATGGACCCTTATTCCCCTGATGGGCCTCAGAGAAACATCAAGGCCTATGGTATTTACCCAAAAGCAACGTTTTTTAACCATGATTGTATTCCTAATGCATGCAGGTTTGATTATGTGGACACTAGTGATCCGGGGGATGAACATAACACTGACATTGTTATCAGGTTGATTCAGGATGTTCCTCCTGGAAGTGAGGTCTGCATAAGCTATTTCAGGATCAATAGGGATTACTCTACCAGGAAAAGGATCTTGATGGAGGATTATGGGTTCACTTGTGGATGTGATAGGTGCAAGATTGAAGCCAATTGGACTGATGGTCAATGCCAAGGAGACAAGAGTGACCTGCCACACATGTGTTTCCTGTCCAAGCATGTTTGTGACAGGAAGAATTGTGCAGGCACTATGGCTCCTCTGCCTCCAAAAGATGATGTACCATCAAATGTTCTTGAGTGTAACTTTTGTGGTAATTTCAAAACTGTTACTGCTTAG 1083 0.4534 MSATETSLLRMEQIPHKGRGLVAAQSLKAGQIVLKESPLILYSASPLFSPSSSSSFSYCDHCFRILPPPPTNTVPCPSCSHHHFCTHKCLSIALNSSHSSWVCQALSLLRDPFSPLLQQPLERQVQARFIVAAYNLSIHSPSDLHTLLSLHGTPDAPIFDAAHFLHSLISPLLPPHSHLSVELAAQLIAKDRLNSFCLMDPYSPDGPQRNIKAYGIYPKATFFNHDCIPNACRFDYVDTSDPGDEHNTDIVIRLIQDVPPGSEVCISYFRINRDYSTRKRILMEDYGFTCGCDRCKIEANWTDGQCQGDKSDLPHMCFLSKHVCDRKNCAGTMAPLPPKDDVPSNVLECNFCGNFKTVTA. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01231 360 SMART set_7 7 275 IPR001214 GO:0005515
Seca10g01231 360 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 306 357 IPR044238 -
Seca10g01231 360 Gene3D - 58 112 - -
Seca10g01231 360 Gene3D SET domain 20 296 IPR046341 -
Seca10g01231 360 SUPERFAMILY SET domain 9 296 IPR046341 -
Seca10g01231 360 CDD SET_SMYD 193 295 - -
Seca10g01231 360 Gene3D - 113 195 - -
Seca10g01231 360 ProSiteProfiles SET domain profile. 7 269 IPR001214 GO:0005515
Seca10g01231 360 Pfam SET domain 18 268 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01231 Seca-Chr10 12182005 12183087 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g01231 SET 7.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01231 - - gmx:100808530 499.975