Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01230 ATGTTTCAATGCATAAGCTGTTCGAAGCAGGCAAAGGCAGAGGATGAAGAAGGTCGTGGGAGTGGCACGCCGAAGAGAAAGGAAGCCGTCAAAAGCCTGACTTCGCAGTTAAAGGATTTCGTGCTGAAGATTTCAGGTGTTAAGTCAAAAACAAACACAGGCTCAACTTCAGACAGGGGAAAGAAACCCTTGGCTGATTATGAGACACTATCTGAAGGGGTTCAATACCCCTACATGGGTGGTGTAGGGTCGGGTTCCACCCCTCCCTGGGACCTGAGAAGCTCTCTTCCTGGTGGGAGCAGGTCGGAAAATAGATACATAGGGGCACCCGGTGGTAACATGACCCCAGGAAGGACTGAACCAGTAGCAGCTGCCCAAGAGGGGTTGGGGGAAGAGGATGAAGCTATAGAATGGGTGGCTCAGGTGGAGCCAGGAGTCCAAATCACATTTGAGACCATTCCTACTGGGGGACATATTCTCAAGAGAATTCGCTTTGACCGAGAGATGTTTGACAGGAGCCAAGCTCAAGCATGGTGGGGTGTGAATTATGACAGGATCATGGAACTTTACAATGTACAGAGTTTCAACCATAATGCTATCAGCACTTCTGAGAGGTTTGAGGATGAGGTAATTAATCCACAACTCACAAATCCATATAATCAGGGGGGTAATAGCCCTGTGTCTGCATGGGTAAATGCAACAGCAAGGACTCACTACTACCAAAGCTCAGTCTCAGGAATCACTTTGGACAACATTGGTGGTGGTGAAAACTTTGAAGAAGGAGGGCCATCCAATGAAGCTGCAAGAATATCCAACTCTTCTATAGAGGAGGAGACTGAACTCAACATTGACAATGAGCCAGAATGGATTGAGCAGGATCAGCCTGGAGTGTTGCTCACAATCAGGGCTCTCCCCGATGGCACAAAAATCCTTCGTCGTGTCAGGTTTAGCCGCCGGATATTTAATGAAGAAAGTGCCAAGCAGTGGTGGGAGGCAAACAGAGAGAGGATTGAAGGAGATTATCTCTGA 1029 0.481 MFQCISCSKQAKAEDEEGRGSGTPKRKEAVKSLTSQLKDFVLKISGVKSKTNTGSTSDRGKKPLADYETLSEGVQYPYMGGVGSGSTPPWDLRSSLPGGSRSENRYIGAPGGNMTPGRTEPVAAAQEGLGEEDEAIEWVAQVEPGVQITFETIPTGGHILKRIRFDREMFDRSQAQAWWGVNYDRIMELYNVQSFNHNAISTSERFEDEVINPQLTNPYNQGGNSPVSAWVNATARTHYYQSSVSGITLDNIGGGENFEEGGPSNEAARISNSSIEEETELNIDNEPEWIEQDQPGVLLTIRALPDGTKILRRVRFSRRIFNEESAKQWWEANRERIEGDYL. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01230 342 MobiDBLite consensus disorder prediction 1 31 - -
Seca10g01230 342 Pfam Transcription factor regulating root and shoot growth via Pin3 287 340 IPR013591 -
Seca10g01230 342 Pfam Transcription factor regulating root and shoot growth via Pin3 137 190 IPR013591 -
Seca10g01230 342 ProSiteProfiles BRX domain profile. 136 191 IPR013591 -
Seca10g01230 342 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 342 IPR044532 -
Seca10g01230 342 MobiDBLite consensus disorder prediction 10 26 - -
Seca10g01230 342 ProSiteProfiles BRX domain profile. 287 342 IPR013591 -
Seca10g01230 342 Pfam Transcription factor BRX N-terminal domain 22 46 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01230 Seca-Chr10 12139209 12149956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01230 1 342 Major Intrinsic Protein MIP AT1G31880 45.938 3.20e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01230 - - gmx:100785003 313.923