Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01229 ATGGAGAGGTACAAGTTAATCAAGGAAGTTGGTGATGGAACGTTTGGGAGTGTTTGGAGAGCTATTAATAAGCAAACTGGTGAAGTTGTTGCGATCAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTGAAGTCATTACGAAAAATGAACCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTACTTTGTTTTTGAGTACATGGAATGTAACCTATACCAACTTATGAAAGATAGGGAAAAGCTGTTTTCTGAAGGTGAAATTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTACATGCACCAACGTGGATACTTCCATCGTGACCTGAAGCCTGAAAACTTACTGGTTACTAAGGATATTATCAAAATTGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTACACTGAATATGTCTCCACACGATGGTATCGTGCTCCTGAAGTGCTTCTTCAGTCTTACATATATGGCTCTAAAGTTGATATGTGGGCAATGGGTGCTATAATGGCTGAGCTGTTCTCTCTTCGTCCTCTTTTTCCAGGAGCCAGTGAAGCGGATGAGATCTACAAAATATGTGGTGTGATAGGCAGTCCAACTGCTGAATCATGGGCTGATGGACTGAAACTTGCAAGGGATATTAACTATCAGTTTCCACAGCTTGCTGGTGTACATCTTTCTGCATTGATGCCATCTGCAAGTGATGACGCAATCAGCCTTATCACATCACTTTGCTCCTGGGATCCTTGCAAAAGGCCAACAGCTTCAGAGGCTCTTCAACATCCTTTCTTCCAGAGTTGCTTTTACATTCCTCCATCCCTTCGCACCAGAGCAGTAGCTAGAACTCCTCCACCTGTTGGAACTAGAGGAGCACTGGATCAGCAAGGGGTCAAGAGATATTCTGGTGTATTGCCTAATTCAAAGCTCACCAATAACTTTTCTTCCATGAAAGTACATCCTTCATTAGCTTCAAGTTCTCATTCAAATTCAATTGTGAACGTTACAGGTGTGCAACGGAAGCTGGATATGGTAAATCAGGATGGAATTAAGAGTGAAAAATCAATGAAGACTACCAAACAATCAAAATATCGACAGCCAGGAAAGGACAGCCCAACTTCTATAAACAAAGGGAGGATTGCACGTGGGGTTTCTGAAACAACTGAGAGGTTGGCCAATATGTCTATTGGTACTCGAAGACAGTCAATGGGGCAACCCCGTCCTCCTCCAATGAAGGCAGGAGGCAATTGGATTTCTGATTCTGGAAACTTCATGCTCAGGCCCGCACAACAGATTTCGACTGGAAGAACTTTCACTAGAAAAGTTGCCGGATGA 1389 0.4262 MERYKLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSEGEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSYIYGSKVDMWAMGAIMAELFSLRPLFPGASEADEIYKICGVIGSPTAESWADGLKLARDINYQFPQLAGVHLSALMPSASDDAISLITSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRTRAVARTPPPVGTRGALDQQGVKRYSGVLPNSKLTNNFSSMKVHPSLASSSHSNSIVNVTGVQRKLDMVNQDGIKSEKSMKTTKQSKYRQPGKDSPTSINKGRIARGVSETTERLANMSIGTRRQSMGQPRPPPMKAGGNWISDSGNFMLRPAQQISTGRTFTRKVAG. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01229 462 MobiDBLite consensus disorder prediction 365 395 - -
Seca10g01229 462 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Seca10g01229 462 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01229 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Seca10g01229 462 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Seca10g01229 462 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Seca10g01229 462 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01229 462 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Seca10g01229 462 Gene3D Transferase(Phosphotransferase) domain 1 84 288 - -
Seca10g01229 462 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 342 - -
Seca10g01229 462 FunFam serine/threonine-protein kinase MAK isoform X1 84 293 - -
Seca10g01229 462 CDD STKc_MAK_like 4 283 - -
Seca10g01229 462 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01229 462 MobiDBLite consensus disorder prediction 365 382 - -
Seca10g01229 462 MobiDBLite consensus disorder prediction 417 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01229 Seca-Chr10 12132001 12138695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01229 1 286 Core Cell Cycle Gene Families AT1G66750 38.832 3.13e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Seca10g01229 Pkinase 2.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01229 K08829 - gmx:100810150 835.869