Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca10g01225 | ATGGCCGTGAATCTGACACACGGGGCGATCGAGACTATGTGCAGCGACAACTTCTCTTCGGTGGAGTTGCAGCCGGTACTGCAGGTTATCGACTTGAAGTTGGTGCAGTCGCAGCAGAACAGCGCCGTCGAGAGGTACCGCCTTGTGCTCTCTGACGGTTCATATTATCAGCAAGGGATGCTCGCCACGCAGAAGAACGAGTTGGTCCGTTCTCGAAGTTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCAGTTCACCTGCAACGTTGTCCAGGGCCGCAAGATTATTATCATCTTTGACCTAGATGTTTTACTGGACAAATGTGACCTGATTGGAGTACCTGTTGCACTACCAAAAAATACATCTGCGGAATCTGCCACTGGTCAATCAGGAATAACCTCTGGGAATTCACAGTCTTTAAATGGTAGTTCACATGCAAGTGGCATGGCTGCCAGACCAAATATGTCTGGGCCTTCTCCGGATCATCCAAAAGTGAATCTCCCTTCTAATAGTGTTCATTCTAGCAGTTCTGACTCTGTAAGATATGGTGCTGCTAATGCTCCTTCTACTTATGGTAGTCCACATGCAAGTGGCTTGACTGCTAGACCAAATATGTCCAGGCCTTCTCCAGATCATCCAAAAATGAATCTTCCTTCTAACAGTGTTCACTCTAGCAGTCCTGACTCTGTAAGATATGATGCTTCTAATTCTCCTCCTACTTATCCTAAAGCAGAGCCTGGTGGCAGTTTGCCTAGATCAGCACCATTCAATGGGTCTTATGGTGATCAGAACACTGGTTTCCGCAATCCCCAGTATGAGGCTTCAAGGCCAATGCAAAATTCTTATGTCCGTCCACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACCAACAGAGGTCCTGTAGGAAGAAATGAAGCTCCCCTCAGGATACTTCCAATTGCTGCATTGAATCCATACCAGAATACGTGGGCAATTAAAGCCAGAGTAACGGCTAAGGCAGAACTCAGACACTATAATAATGCCCGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTGGATTCTCATGGTGGCGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAATTTTATAATGTAATTGAAGCTGGTAAAATCTATCTGGTTTCCAGGGGAAGCATAAAGCCAGCTCAAAAGAATTTCAATCACCTCCGTAATGATCAAGAGATAACTCTTGATATTACTTCGATTATACAGCCGTGCCTTGATGATGATAACTCAATTCCAAAGCAGACATTTTCTTTTCGTCCCATTAGCGAAATTGAAAATATGGAAAACAACAGCATTTTGGATTTGATTGGTGTGGTGTCTTCTATTAGTCCTACAACTTCAATCATGAGAAAAAATGGCACTGAAACACAGAAGAGAACTCTCCAGTTGAAAGACATGTCTGGCCGAAGCGTTGAGTTAACTTTATGGGGAAATTTTTGCAATGTAGAAGGACAAAGACTGCAAACTATTTGCGATTCTGGGACATTTCCAGTTTTGGCTGTAAAAGCTGCTAGAGTAAATGATTTCAATGGAAAATCAGTTGGGACCATAGCCTCCAGCCAGTTATTTGTAGAACCTGATTTTGCAGAGGCTTGTACACTCAGAGAATGGTTTGACAAGGAAGGGAAGAATGTCCCAACTCTCTCTATTTCCAGAGAAGCATCTAGTATTGGTAAAACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTATCTGTGCAAGTGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGAGATAGGCAATGCAACAAAAAGGTTACCAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACATTCTGCAAATCCAGATACAAGATCACACTGGCGTAACATGGGTTTCTGCTTTCCAGGAGGGTGGTGAGCAGATCATGGGTCTACCTGCAAAAGATTTGTATTATCTGAAATTCGAAGAACAAGATGATGAAAAATTTGCGGAAATCATCCGTAAGGTTCTCTTCAATAAATATGTGTTCAAGTTAAAAGTTAAGGAGGAAACATTCAGTGATGAACAGCGTGTTAAGTCAACGGTAGTAAAAGCAGAGAAGGTAAACTTTGCATCTGAATCTAGAATTCTGTTGGATTTGATTGATAAACTGAAGTCTGAGAAAGCAGAAGGTGCCAGTGCCACTCCTAACTCTGTCATCAATAATACTGGACTGGGGAGCGTTGGATCTGGACAAGCTATGCCACCTATTTATAATCCTATAAAGAGCAACACTAATGCCAATAGAGATTATGGGATGCCGGCAAATCAAGTGGGTCAATATGGAAACCAATATAGCAGTTCTTTTGGTTCATCAGGGGCTCCTGGTTCATACATGTCATGTAACAACTGTGGAGGCTCTGGTCATAGCTCTGTTCTATGCCCAAATACTACAAATCGACCTGGACAGTTTGCAGGAGGCTCCTATGGAAACAGGGTGTCTGCTGCATCAAGTGGTGCCTCTGGTGAATGCTTTAAGTGCCATCAAACTGGCCACTGGGCAAAAGACTGTCCTGGTATTAGTGCAGCACCCCCAGCGTATGGAAGCAGTAATGCAATGCAAGGAAGATATGGGGTTGCTCAAAGGCAACAATTTGGAGGATACTGA | 2757 | 0.4324 | MAVNLTHGAIETMCSDNFSSVELQPVLQVIDLKLVQSQQNSAVERYRLVLSDGSYYQQGMLATQKNELVRSRSLQKGSVVRLTQFTCNVVQGRKIIIIFDLDVLLDKCDLIGVPVALPKNTSAESATGQSGITSGNSQSLNGSSHASGMAARPNMSGPSPDHPKVNLPSNSVHSSSSDSVRYGAANAPSTYGSPHASGLTARPNMSRPSPDHPKMNLPSNSVHSSSPDSVRYDASNSPPTYPKAEPGGSLPRSAPFNGSYGDQNTGFRNPQYEASRPMQNSYVRPPQPMYRQPSPMYTNRGPVGRNEAPLRILPIAALNPYQNTWAIKARVTAKAELRHYNNARGDGKVFSFDLLDSHGGEIRATCFNAVADQFYNVIEAGKIYLVSRGSIKPAQKNFNHLRNDQEITLDITSIIQPCLDDDNSIPKQTFSFRPISEIENMENNSILDLIGVVSSISPTTSIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQTICDSGTFPVLAVKAARVNDFNGKSVGTIASSQLFVEPDFAEACTLREWFDKEGKNVPTLSISREASSIGKTDVRKTISQIKDEKLGTSEKPDWISICASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQIQIQDHTGVTWVSAFQEGGEQIMGLPAKDLYYLKFEEQDDEKFAEIIRKVLFNKYVFKLKVKEETFSDEQRVKSTVVKAEKVNFASESRILLDLIDKLKSEKAEGASATPNSVINNTGLGSVGSGQAMPPIYNPIKSNTNANRDYGMPANQVGQYGNQYSSSFGSSGAPGSYMSCNNCGGSGHSSVLCPNTTNRPGQFAGGSYGNRVSAASSGASGECFKCHQTGHWAKDCPGISAAPPAYGSSNAMQGRYGVAQRQQFGGY. | 919 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca10g01225 | 918 | Gene3D | - | 424 | 562 | IPR012340 | - | |
| Seca10g01225 | 918 | MobiDBLite | consensus disorder prediction | 121 | 292 | - | - | |
| Seca10g01225 | 918 | Gene3D | - | 563 | 754 | IPR012340 | - | |
| Seca10g01225 | 918 | ProSiteProfiles | Zinc finger CCHC-type profile. | 874 | 888 | IPR001878 | GO:0003676|GO:0008270 | |
| Seca10g01225 | 918 | Pfam | Replication protein A OB domain | 435 | 538 | IPR031657 | - | |
| Seca10g01225 | 918 | CDD | RPA1_DBD_A | 314 | 416 | - | - | |
| Seca10g01225 | 918 | SMART | c2hcfinal6 | 830 | 846 | IPR001878 | GO:0003676|GO:0008270 | |
| Seca10g01225 | 918 | SMART | c2hcfinal6 | 873 | 889 | IPR001878 | GO:0003676|GO:0008270 | |
| Seca10g01225 | 918 | Pfam | Replication factor-A C terminal domain | 596 | 746 | IPR013955 | - | |
| Seca10g01225 | 918 | SUPERFAMILY | Retrovirus zinc finger-like domains | 859 | 891 | IPR036875 | GO:0003676|GO:0008270 |
Showing 1 to 10 of 34 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca10g01225 | K07466 | - | gmx:100778597 | 1259.2 |
Showing 1 to 1 of 1 entries