Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01225 ATGGCCGTGAATCTGACACACGGGGCGATCGAGACTATGTGCAGCGACAACTTCTCTTCGGTGGAGTTGCAGCCGGTACTGCAGGTTATCGACTTGAAGTTGGTGCAGTCGCAGCAGAACAGCGCCGTCGAGAGGTACCGCCTTGTGCTCTCTGACGGTTCATATTATCAGCAAGGGATGCTCGCCACGCAGAAGAACGAGTTGGTCCGTTCTCGAAGTTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCAGTTCACCTGCAACGTTGTCCAGGGCCGCAAGATTATTATCATCTTTGACCTAGATGTTTTACTGGACAAATGTGACCTGATTGGAGTACCTGTTGCACTACCAAAAAATACATCTGCGGAATCTGCCACTGGTCAATCAGGAATAACCTCTGGGAATTCACAGTCTTTAAATGGTAGTTCACATGCAAGTGGCATGGCTGCCAGACCAAATATGTCTGGGCCTTCTCCGGATCATCCAAAAGTGAATCTCCCTTCTAATAGTGTTCATTCTAGCAGTTCTGACTCTGTAAGATATGGTGCTGCTAATGCTCCTTCTACTTATGGTAGTCCACATGCAAGTGGCTTGACTGCTAGACCAAATATGTCCAGGCCTTCTCCAGATCATCCAAAAATGAATCTTCCTTCTAACAGTGTTCACTCTAGCAGTCCTGACTCTGTAAGATATGATGCTTCTAATTCTCCTCCTACTTATCCTAAAGCAGAGCCTGGTGGCAGTTTGCCTAGATCAGCACCATTCAATGGGTCTTATGGTGATCAGAACACTGGTTTCCGCAATCCCCAGTATGAGGCTTCAAGGCCAATGCAAAATTCTTATGTCCGTCCACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACCAACAGAGGTCCTGTAGGAAGAAATGAAGCTCCCCTCAGGATACTTCCAATTGCTGCATTGAATCCATACCAGAATACGTGGGCAATTAAAGCCAGAGTAACGGCTAAGGCAGAACTCAGACACTATAATAATGCCCGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTGGATTCTCATGGTGGCGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAATTTTATAATGTAATTGAAGCTGGTAAAATCTATCTGGTTTCCAGGGGAAGCATAAAGCCAGCTCAAAAGAATTTCAATCACCTCCGTAATGATCAAGAGATAACTCTTGATATTACTTCGATTATACAGCCGTGCCTTGATGATGATAACTCAATTCCAAAGCAGACATTTTCTTTTCGTCCCATTAGCGAAATTGAAAATATGGAAAACAACAGCATTTTGGATTTGATTGGTGTGGTGTCTTCTATTAGTCCTACAACTTCAATCATGAGAAAAAATGGCACTGAAACACAGAAGAGAACTCTCCAGTTGAAAGACATGTCTGGCCGAAGCGTTGAGTTAACTTTATGGGGAAATTTTTGCAATGTAGAAGGACAAAGACTGCAAACTATTTGCGATTCTGGGACATTTCCAGTTTTGGCTGTAAAAGCTGCTAGAGTAAATGATTTCAATGGAAAATCAGTTGGGACCATAGCCTCCAGCCAGTTATTTGTAGAACCTGATTTTGCAGAGGCTTGTACACTCAGAGAATGGTTTGACAAGGAAGGGAAGAATGTCCCAACTCTCTCTATTTCCAGAGAAGCATCTAGTATTGGTAAAACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTATCTGTGCAAGTGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGAGATAGGCAATGCAACAAAAAGGTTACCAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACATTCTGCAAATCCAGATACAAGATCACACTGGCGTAACATGGGTTTCTGCTTTCCAGGAGGGTGGTGAGCAGATCATGGGTCTACCTGCAAAAGATTTGTATTATCTGAAATTCGAAGAACAAGATGATGAAAAATTTGCGGAAATCATCCGTAAGGTTCTCTTCAATAAATATGTGTTCAAGTTAAAAGTTAAGGAGGAAACATTCAGTGATGAACAGCGTGTTAAGTCAACGGTAGTAAAAGCAGAGAAGGTAAACTTTGCATCTGAATCTAGAATTCTGTTGGATTTGATTGATAAACTGAAGTCTGAGAAAGCAGAAGGTGCCAGTGCCACTCCTAACTCTGTCATCAATAATACTGGACTGGGGAGCGTTGGATCTGGACAAGCTATGCCACCTATTTATAATCCTATAAAGAGCAACACTAATGCCAATAGAGATTATGGGATGCCGGCAAATCAAGTGGGTCAATATGGAAACCAATATAGCAGTTCTTTTGGTTCATCAGGGGCTCCTGGTTCATACATGTCATGTAACAACTGTGGAGGCTCTGGTCATAGCTCTGTTCTATGCCCAAATACTACAAATCGACCTGGACAGTTTGCAGGAGGCTCCTATGGAAACAGGGTGTCTGCTGCATCAAGTGGTGCCTCTGGTGAATGCTTTAAGTGCCATCAAACTGGCCACTGGGCAAAAGACTGTCCTGGTATTAGTGCAGCACCCCCAGCGTATGGAAGCAGTAATGCAATGCAAGGAAGATATGGGGTTGCTCAAAGGCAACAATTTGGAGGATACTGA 2757 0.4324 MAVNLTHGAIETMCSDNFSSVELQPVLQVIDLKLVQSQQNSAVERYRLVLSDGSYYQQGMLATQKNELVRSRSLQKGSVVRLTQFTCNVVQGRKIIIIFDLDVLLDKCDLIGVPVALPKNTSAESATGQSGITSGNSQSLNGSSHASGMAARPNMSGPSPDHPKVNLPSNSVHSSSSDSVRYGAANAPSTYGSPHASGLTARPNMSRPSPDHPKMNLPSNSVHSSSPDSVRYDASNSPPTYPKAEPGGSLPRSAPFNGSYGDQNTGFRNPQYEASRPMQNSYVRPPQPMYRQPSPMYTNRGPVGRNEAPLRILPIAALNPYQNTWAIKARVTAKAELRHYNNARGDGKVFSFDLLDSHGGEIRATCFNAVADQFYNVIEAGKIYLVSRGSIKPAQKNFNHLRNDQEITLDITSIIQPCLDDDNSIPKQTFSFRPISEIENMENNSILDLIGVVSSISPTTSIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQTICDSGTFPVLAVKAARVNDFNGKSVGTIASSQLFVEPDFAEACTLREWFDKEGKNVPTLSISREASSIGKTDVRKTISQIKDEKLGTSEKPDWISICASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQIQIQDHTGVTWVSAFQEGGEQIMGLPAKDLYYLKFEEQDDEKFAEIIRKVLFNKYVFKLKVKEETFSDEQRVKSTVVKAEKVNFASESRILLDLIDKLKSEKAEGASATPNSVINNTGLGSVGSGQAMPPIYNPIKSNTNANRDYGMPANQVGQYGNQYSSSFGSSGAPGSYMSCNNCGGSGHSSVLCPNTTNRPGQFAGGSYGNRVSAASSGASGECFKCHQTGHWAKDCPGISAAPPAYGSSNAMQGRYGVAQRQQFGGY. 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01225 918 Gene3D - 424 562 IPR012340 -
Seca10g01225 918 MobiDBLite consensus disorder prediction 121 292 - -
Seca10g01225 918 Gene3D - 563 754 IPR012340 -
Seca10g01225 918 ProSiteProfiles Zinc finger CCHC-type profile. 874 888 IPR001878 GO:0003676|GO:0008270
Seca10g01225 918 Pfam Replication protein A OB domain 435 538 IPR031657 -
Seca10g01225 918 CDD RPA1_DBD_A 314 416 - -
Seca10g01225 918 SMART c2hcfinal6 830 846 IPR001878 GO:0003676|GO:0008270
Seca10g01225 918 SMART c2hcfinal6 873 889 IPR001878 GO:0003676|GO:0008270
Seca10g01225 918 Pfam Replication factor-A C terminal domain 596 746 IPR013955 -
Seca10g01225 918 SUPERFAMILY Retrovirus zinc finger-like domains 859 891 IPR036875 GO:0003676|GO:0008270
Seca10g01225 918 Pfam OB-fold nucleic acid binding domain 326 414 IPR004365 GO:0003676
Seca10g01225 918 SUPERFAMILY Nucleic acid-binding proteins 577 754 IPR012340 -
Seca10g01225 918 Gene3D - 795 893 - -
Seca10g01225 918 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca10g01225 918 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Seca10g01225 918 Pfam Zinc knuckle 873 888 IPR001878 GO:0003676|GO:0008270
Seca10g01225 918 NCBIfam replication factor-a protein 1 (rpa1) 288 753 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca10g01225 918 MobiDBLite consensus disorder prediction 213 236 - -
Seca10g01225 918 FunFam Replication protein A subunit 424 562 - -
Seca10g01225 918 Gene3D - 3 117 IPR012340 -
Seca10g01225 918 FunFam Replication protein A subunit 563 754 - -
Seca10g01225 918 Gene3D - 310 421 IPR012340 -
Seca10g01225 918 CDD RPA1_DBD_B 446 553 - -
Seca10g01225 918 FunFam Replication protein A subunit 4 118 - -
Seca10g01225 918 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca10g01225 918 SUPERFAMILY Nucleic acid-binding proteins 430 559 IPR012340 -
Seca10g01225 918 SUPERFAMILY Retrovirus zinc finger-like domains 822 889 IPR036875 GO:0003676|GO:0008270
Seca10g01225 918 SUPERFAMILY Nucleic acid-binding proteins 312 425 IPR012340 -
Seca10g01225 918 PANTHER REPLICATION FACTOR A 1, RFA1 325 740 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca10g01225 918 MobiDBLite consensus disorder prediction 256 287 - -
Seca10g01225 918 CDD RPA1_DBD_C 580 753 IPR047192 -
Seca10g01225 918 MobiDBLite consensus disorder prediction 121 150 - -
Seca10g01225 918 MobiDBLite consensus disorder prediction 163 204 - -
Seca10g01225 918 FunFam Replication protein A subunit 311 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01225 Seca-Chr10 12071417 12074965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01225 1 858 Core DNA Replication Machinery Family AT5G45400 52.692 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01225 K07466 - gmx:100778597 1259.2