Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01224 ATGGCCGTGAATCTGACACAAGGGGCGATCGAGACTATGTGCAGCGACAACTTCTCTTCGGAGGAGTTGCAGCCGGTACTGCAGGTTATCGACTTGAAGTTGTTGCAGTCGCAGCAAAACAGCGCCGTCGAGAGGTACCGCCTTGTGATGTCTGACGGTAAGTATTATCAGCAAGGGATGCTCGCCACGCAGAAGAACGAGTTGGTCCGTTCTCGAAGCTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCAGTTCATCTGCAACGTTGTCCAGGGCCGCAACAGGATTATTTTCATCGTTGACCTAGATGTTTTACTAGACAAATGTGACCCGATTGGAGAACCTGTTGAACTACCAAAAAATACATCTGCGGAATCTGCCACTGGTCAATCAGGAATAACCTCTGGGAATTCACAGTCTTTAAATGGTAGTTCACATGCAAGTGGCATGGCTGCCAGACCAAATATGTCTGGGCCTTCTCCGGATCATCCAAAAATGAATCTTCCTTCTAATAGTGTTCATTCTAGCAGTTCTGACTCTGTAAGATATGGTGCTGCTAATGCTCCTTCTACTTATGGTAGTCCACATGCAAGTGGCTTGACTGCTAGACCAAATATGTCCGGGCCTTCTCCAGATCATTCAAAAATGAATCTTCCTTCTAACAGTGTTCATTCTGGCAGTCCTGACTCTGTAAGATATGATGCTTCTAATGCTCCTCCTACTTATTCTAAAGCAAAGCCTGGTGGGAGTTTGCCTAGATCAGCACCATTCAATGGGTCTTATGGTGATCAGAACACTGGCTTCCGCAATCCCCAGTATGAGGCTTCAAGGCCAATGCAAAATTCTTATGCCCATCCACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACTAACAGAGGTCCTATGGGAAGAAATGAAGCTCCCCTCAGGATACTTCCAATTGCTGCATTGAATCCATACCAGAATACGTGGGCAATTAAAGCCAGAGTAACGGCTAAGGGAGAACTCAGACACTACAATAATGCCCGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTGGATTCTCATGGTGGTGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAATTTTATAATGTAATTGAAGCTGGTAAAATCTATCTGGTTTCCAGGGGAAGCATAAAGCCAGCTCAAAAGAATTTCAATCACCTCCGTAATGATCAAGAGATAACTCTTGATATTACTTCGATTATACAGCCGTGCCTTGATGATGATAACTCAATTCCAAAGCAGACATTTTCTTTTCGTCCCATTAGCGAAATTGAAAATATGGAAAACAACAGCATTTTGGATTTGATTGGTGTGGTGTCTTCTATTAGTCCTACAACTTCAATCATGAGAAAAAATGGCACTGAAACACAGAAGAGAACTCTCCAGTTGAAAGACAAGTCTGGCCGAAGCGTTGAGTTAACTTTATGGGGAAATTTTTGCAATGTAGAAGGACAAAGACTGCAAACTATTTGCGATTCTGGGACATTTCCACTTTTGGCTGTAAAAGCTGCTAGAGTAAATGATTTCAATGGAAAATCAGTTGGGACCATAGCCTCCAGCCAGTTATTTGTAGAACCTGATTTTGCAGAGGCTTGTACACTCAGAGAATGGTTTGACAAGGAAGGGAAGAATGTCCCAACTCTCTCTATTTCCAGAGAAGCATCTAGTATTGGTAAAACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTATCTGTGCAAGTGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGAGATAGGCAATGCAACAAAAAGGTTACCAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACATTCTGCAAATGCAGATACAAGATCACACTGGCGTAACATGGGTTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATGGGTCTACCTGCAAAAGATTTGTATTATCTGAAATTCGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTCTTCAATAAATATGTGTTCAAGTTAAAAGTTAAGGAGGAAACATTCAGTGATGAACAGCGTGTTAAGTCAACGGTAGTAAAAGCAGAGAAGGTAAACTTTGCATCTGAATCTAGAATTCTGTTGGATTTGATTGATAAACTGAAGTCTGAGAAAGCAGAAGGTGCCAGTGCCACTCCTAACTCTGTCATCAATAATACTGGACTGGGGAGCGTTGGATCTGGACAAGCTATGCCACCTATTTATAATCCTATAAAGAGCAACACTAATGCCAATAGAGATTATGGGATGCCGGCAAATCAAGTGGGTCAATATGGAAACCAATATAGCAGTTCTTTTGGTTCATCAGGGGCTCCTGGTTCATACATGTCATGTAACAACTGTGGAGGCTCTGGTCATAGCTCTGTCCTATGCCCAAATACTACAAATCGACCTGGACAGTTTGCAGGAGGCTCCTATGGAAACAGGGTGTCTGCTGCATCAAGTGGTGCCTCTGGTGAATGCTTTAAGTGCCATCAATCTGGCCACTGGGCAAAAGACTGTCCTGGTATTAGTGCAGCACCCCCAGCGTATGGAAGCAGTAATGCAATGCAAGGAAGATATGGGGTTGCTCAAAGGCAACAATTTGGAGGATACTGA 2760 0.4301 MAVNLTQGAIETMCSDNFSSEELQPVLQVIDLKLLQSQQNSAVERYRLVMSDGKYYQQGMLATQKNELVRSRSLQKGSVVRLTQFICNVVQGRNRIIFIVDLDVLLDKCDPIGEPVELPKNTSAESATGQSGITSGNSQSLNGSSHASGMAARPNMSGPSPDHPKMNLPSNSVHSSSSDSVRYGAANAPSTYGSPHASGLTARPNMSGPSPDHSKMNLPSNSVHSGSPDSVRYDASNAPPTYSKAKPGGSLPRSAPFNGSYGDQNTGFRNPQYEASRPMQNSYAHPPQPMYRQPSPMYTNRGPMGRNEAPLRILPIAALNPYQNTWAIKARVTAKGELRHYNNARGDGKVFSFDLLDSHGGEIRATCFNAVADQFYNVIEAGKIYLVSRGSIKPAQKNFNHLRNDQEITLDITSIIQPCLDDDNSIPKQTFSFRPISEIENMENNSILDLIGVVSSISPTTSIMRKNGTETQKRTLQLKDKSGRSVELTLWGNFCNVEGQRLQTICDSGTFPLLAVKAARVNDFNGKSVGTIASSQLFVEPDFAEACTLREWFDKEGKNVPTLSISREASSIGKTDVRKTISQIKDEKLGTSEKPDWISICASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQMQIQDHTGVTWVTAFQEGGEEIMGLPAKDLYYLKFEEQDDEKFAEIIRKVLFNKYVFKLKVKEETFSDEQRVKSTVVKAEKVNFASESRILLDLIDKLKSEKAEGASATPNSVINNTGLGSVGSGQAMPPIYNPIKSNTNANRDYGMPANQVGQYGNQYSSSFGSSGAPGSYMSCNNCGGSGHSSVLCPNTTNRPGQFAGGSYGNRVSAASSGASGECFKCHQSGHWAKDCPGISAAPPAYGSSNAMQGRYGVAQRQQFGGY. 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01224 919 SUPERFAMILY Nucleic acid-binding proteins 431 560 IPR012340 -
Seca10g01224 919 CDD RPA1_DBD_B 447 554 - -
Seca10g01224 919 FunFam Replication protein A subunit 312 422 - -
Seca10g01224 919 Gene3D - 311 422 IPR012340 -
Seca10g01224 919 FunFam Replication protein A subunit 4 119 - -
Seca10g01224 919 SUPERFAMILY Retrovirus zinc finger-like domains 860 892 IPR036875 GO:0003676|GO:0008270
Seca10g01224 919 ProSiteProfiles Zinc finger CCHC-type profile. 875 889 IPR001878 GO:0003676|GO:0008270
Seca10g01224 919 SUPERFAMILY Nucleic acid-binding proteins 1 113 IPR012340 -
Seca10g01224 919 SUPERFAMILY Retrovirus zinc finger-like domains 823 890 IPR036875 GO:0003676|GO:0008270
Seca10g01224 919 SUPERFAMILY Nucleic acid-binding proteins 313 426 IPR012340 -
Seca10g01224 919 Gene3D - 3 119 IPR012340 -
Seca10g01224 919 Pfam Replication factor-A protein 1, N-terminal domain 5 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca10g01224 919 Pfam Zinc knuckle 874 889 IPR001878 GO:0003676|GO:0008270
Seca10g01224 919 CDD RPA1_DBD_C 581 754 IPR047192 -
Seca10g01224 919 CDD RPA1_DBD_A 315 417 - -
Seca10g01224 919 Pfam OB-fold nucleic acid binding domain 327 415 IPR004365 GO:0003676
Seca10g01224 919 CDD RPA1N 8 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca10g01224 919 Pfam Replication factor-A C terminal domain 597 747 IPR013955 -
Seca10g01224 919 FunFam Replication protein A subunit 425 563 - -
Seca10g01224 919 MobiDBLite consensus disorder prediction 257 288 - -
Seca10g01224 919 FunFam Replication protein A subunit 564 755 - -
Seca10g01224 919 SUPERFAMILY Nucleic acid-binding proteins 578 755 IPR012340 -
Seca10g01224 919 Gene3D - 564 755 IPR012340 -
Seca10g01224 919 Gene3D - 796 894 - -
Seca10g01224 919 MobiDBLite consensus disorder prediction 115 290 - -
Seca10g01224 919 Pfam Replication protein A OB domain 436 539 IPR031657 -
Seca10g01224 919 MobiDBLite consensus disorder prediction 164 237 - -
Seca10g01224 919 SMART c2hcfinal6 831 847 IPR001878 GO:0003676|GO:0008270
Seca10g01224 919 SMART c2hcfinal6 874 890 IPR001878 GO:0003676|GO:0008270
Seca10g01224 919 NCBIfam replication factor-a protein 1 (rpa1) 288 754 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca10g01224 919 Gene3D - 425 563 IPR012340 -
Seca10g01224 919 MobiDBLite consensus disorder prediction 121 151 - -
Seca10g01224 919 PANTHER REPLICATION FACTOR A 1, RFA1 326 741 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01224 Seca-Chr10 12059069 12062746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01224 1 859 Core DNA Replication Machinery Family AT5G45400 52.667 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01224 K07466 - gmx:100778597 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01224 10 12059069 12062746 Seca10g01224 10 12059069 12062746 ECH