Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01218 ATGGAGTCCAGTGAGAATGAAAGCGTGTCAGTTCGAGAGGTCCATGCAAATGGAAGCCGCGTAGTAACATCAGAAATTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAGGCAGAATCTGCATTGCGAGAAGGGTTGTCACTCAATTTTGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGCTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAACCCTCTTTTTCTGACAAAGCACAAGTCAAAAAAGGCCGCACCCGTGCTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAGGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATATACAGAAGCTGCTAGTGACTGTAAAAGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTGGCTATGATGAGGCAATCTCAGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAATCGTTTGTTGTTTTCTTGCTGTACAGTGGGGTAGAGGCAAGTCCACCTAGCTTAGCAGTTCAGATTGAGGGGGCTTATGTGCCTAAAAATAATCTTGAAGAGGCAATTCTGCTCTTACTGATTCTTATAAGAAAGTTTTGCCTTGGTAAGGCAGAATGGGACCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAGCCAAACTTCTATTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCACCGTATTGATCGCTGGAATTCTTTAGCTTTGTGTTTTAGTGGAGCTGGACAAAATGACAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAACATGAACGACCAGATGACCTTACATCATTATTGTTAGCTGCTAGGATCTGCAGTGAGGACCCGTATCTTGCTGCTGAGGGAGTTGGCCATGCACAAAGGGCAATCAGTAATGCTCATGGCCTGAACGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTAGGAAAGCAAGCTAAGGTTGCATCTTCTGACTTTGAGAGGTCTCGCCTTCAGTCCAAAGCATTGGAATCATTGGAGGAGGCAATTAGATTGGAACGAAACAATTCTGATCTGATTTTTGAGTTGGCTGTTCAATATGCAGAGCATCGAAATTTGACTGCTGCGCTGCGCTCTGCAAGGCATTTCTTTAATGAAACCGGTGGCTCTATATTGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCACAACAAAAGTATCTGGAAGCTGAAATGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGCTAAAGATCTCACAATCACGACCTATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAAAAGAAATCCTTTGGGTCTTTCCCAATGAGTTCAAAGGCAGAGGATGATAAAGTAAATGAATTTGATATATGGCATGGACTGGCAAATTTATATGCTAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGGAGTACTCTTCTGCGGTAACGCACACTGAAGGTGTTTTGTTTGAAGGACGTGGTCAAAGTCAAGAAGCTCTCAATGCTGCTATTAATTCTGTCCTAATTGAACCAAACTATGTTCCAAGCAAGATCTTGATGGGTGCTTTGGTTCAGAAAATTGACTCAAAGGCATTGCCTGCTGCAAGAAGCATGCTGTCTGATGCACTTAGAGTAGAACCCACCAACCGCAAGGCTTGGTATTACTTGGGATTGGTTCACAAGCAAGATGGCCGAATGGCTGATGCTGCTGACTGCTTCCAAGCAGCTTACATGCTTGAAGAATCTGATCCCATTGAAAGTTTCAGCACTATACTTTGA 2085 0.4345 MESSENESVSVREVHANGSRVVTSEIEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEAALRVFDGIDLQAAIQRLQPSFSDKAQVKKGRTRAESPSSVSQHAASLVLEAIYLKAKSLQKLGKYTEAASDCKSILDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWKQAGGYDEAISAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQIEGAYVPKNNLEEAILLLLILIRKFCLGKAEWDPSVMEHLTFALSVCSQTSILAKQFEDLMPGVYHRIDRWNSLALCFSGAGQNDSALNLLRKSLHKHERPDDLTSLLLAARICSEDPYLAAEGVGHAQRAISNAHGLNEHLKGVALRMLGLCLGKQAKVASSDFERSRLQSKALESLEEAIRLERNNSDLIFELAVQYAEHRNLTAALRSARHFFNETGGSILKAWILLALILSAQQKYLEAEMVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSFPMSSKAEDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKEYSSAVTHTEGVLFEGRGQSQEALNAAINSVLIEPNYVPSKILMGALVQKIDSKALPAARSMLSDALRVEPTNRKAWYYLGLVHKQDGRMADAADCFQAAYMLEESDPIESFSTIL. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01218 694 SUPERFAMILY TPR-like 403 678 IPR011990 GO:0005515
Seca10g01218 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Seca10g01218 694 Pfam Tetratricopeptide repeat 635 679 - -
Seca10g01218 694 Gene3D Tetratricopeptide repeat domain 453 614 IPR011990 GO:0005515
Seca10g01218 694 SMART tpr_5 378 422 IPR019734 GO:0005515
Seca10g01218 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Seca10g01218 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Seca10g01218 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Seca10g01218 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Seca10g01218 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Seca10g01218 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Seca10g01218 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
Seca10g01218 694 Gene3D Tetratricopeptide repeat domain 286 452 IPR011990 GO:0005515
Seca10g01218 694 Gene3D Tetratricopeptide repeat domain 15 201 IPR011990 GO:0005515
Seca10g01218 694 Gene3D Tetratricopeptide repeat domain 628 694 IPR011990 GO:0005515
Seca10g01218 694 SUPERFAMILY TPR-like 118 443 IPR011990 GO:0005515
Seca10g01218 694 SUPERFAMILY TPR-like 49 198 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01218 Seca-Chr10 12013861 12019386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01218 3 694 Calmodulin-binding Proteins AT2G43040 71.695 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01218 K21843 - gmx:100814609 1159.82