Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01212 ATGGCAGATGACGATGGTAACAATCCTTTGTCTGACAACGTTGTTGTACTACTCATTGCCATGGGTTCAGCAGCTTTTGTTGTTTCATTGTACCATGTCATAGCCATTTGCTTGTGCCACCAACGCATCACAGACCAAAATCCACCACAACAGCAGCTACCTCAGCTTGCTGGGGCAGAGACACAGAGCCTCGACCAGAGCAGTTCCTCAGTGGCACGCTTGATTCCTACACACAAGTATCACAAGAAAAAACAACACATGGATGTTGGTGATGGTGATGGTGATGAAGATGGCACTTGTGCTGTTTGCTTGGGAGATTTTGAGGAAGGTGAGGAATTGAGGACATTGCCTGAATGTATGCACTCTTTCCACGTCCCTTGCATTGATATGTGGCTCTATTCTCATTCAAGTTGCCCTGTTTGCCGTGCCAGTGCCACCCCTTCAGCAGTACTCCATCAAGACCGTGACTTGAATGCACATCACAGCATAAATATGACACCAGTTGCTCTCCTCCAAACTGGGTTGGCAAGATGGTGA 537 0.4749 MADDDGNNPLSDNVVVLLIAMGSAAFVVSLYHVIAICLCHQRITDQNPPQQQLPQLAGAETQSLDQSSSSVARLIPTHKYHKKKQHMDVGDGDGDEDGTCAVCLGDFEEGEELRTLPECMHSFHVPCIDMWLYSHSSCPVCRASATPSAVLHQDRDLNAHHSINMTPVALLQTGLARW. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01212 178 CDD RING-H2_EL5-like 100 142 - -
Seca10g01212 178 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Seca10g01212 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 148 IPR013083 -
Seca10g01212 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 145 IPR044675 -
Seca10g01212 178 SUPERFAMILY RING/U-box 90 148 - -
Seca10g01212 178 Pfam Ring finger domain 99 142 IPR001841 -
Seca10g01212 178 SMART ring_2 100 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01212 Seca-Chr10 11974668 11975204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01212 16 154 C3H Transcription Factor Family AT5G17600 35.099 1.18e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01212 - - aip:107639941 205.297