Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g01212 | ATGGCAGATGACGATGGTAACAATCCTTTGTCTGACAACGTTGTTGTACTACTCATTGCCATGGGTTCAGCAGCTTTTGTTGTTTCATTGTACCATGTCATAGCCATTTGCTTGTGCCACCAACGCATCACAGACCAAAATCCACCACAACAGCAGCTACCTCAGCTTGCTGGGGCAGAGACACAGAGCCTCGACCAGAGCAGTTCCTCAGTGGCACGCTTGATTCCTACACACAAGTATCACAAGAAAAAACAACACATGGATGTTGGTGATGGTGATGGTGATGAAGATGGCACTTGTGCTGTTTGCTTGGGAGATTTTGAGGAAGGTGAGGAATTGAGGACATTGCCTGAATGTATGCACTCTTTCCACGTCCCTTGCATTGATATGTGGCTCTATTCTCATTCAAGTTGCCCTGTTTGCCGTGCCAGTGCCACCCCTTCAGCAGTACTCCATCAAGACCGTGACTTGAATGCACATCACAGCATAAATATGACACCAGTTGCTCTCCTCCAAACTGGGTTGGCAAGATGGTGA | 537 | 0.4749 | MADDDGNNPLSDNVVVLLIAMGSAAFVVSLYHVIAICLCHQRITDQNPPQQQLPQLAGAETQSLDQSSSSVARLIPTHKYHKKKQHMDVGDGDGDEDGTCAVCLGDFEEGEELRTLPECMHSFHVPCIDMWLYSHSSCPVCRASATPSAVLHQDRDLNAHHSINMTPVALLQTGLARW. | 179 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g01212 | 178 | CDD | RING-H2_EL5-like | 100 | 142 | - | - | |
Seca10g01212 | 178 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
Seca10g01212 | 178 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 148 | IPR013083 | - | |
Seca10g01212 | 178 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 11 | 145 | IPR044675 | - | |
Seca10g01212 | 178 | SUPERFAMILY | RING/U-box | 90 | 148 | - | - | |
Seca10g01212 | 178 | Pfam | Ring finger domain | 99 | 142 | IPR001841 | - | |
Seca10g01212 | 178 | SMART | ring_2 | 100 | 141 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g01212 | Seca-Chr10 | 11974668 | 11975204 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g01212 | 16 | 154 | C3H Transcription Factor Family | AT5G17600 | 35.099 | 1.18e-21 | 88.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g01212 | - | - | aip:107639941 | 205.297 |